Gene detail

Detailed information of ctg431-3.25-1 in Gigantopelta aegis Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
ctg431-3.25-1	TETRATRICOPEPTIDE-LIKE HELICAL	chr4	38472009	38494867	+

Gene Structure

More details in Jbrowse Sequence

CDS

ctg431-3.25-1

ATGGATGCGCCCATGAACGAAGACGATCGTTCTGACGTCAAGCCTATATTTCCACTGTTCCCCTCGGCTGGATTTACACCATCAACATCTGCATCCACCCAGAGAACTGAATCTCTTGACTGGCTTGAGAATGCTAGTTTTAGTACCCAGGCAGTCAGCACGGTCATTGAGTTACAGAAGAAAGTGGCTGAATATGAAGCACAACAGAATCAAGCTGACAGTTCAAGAAAAGCACCACCTGAAGACATCCAGAGGCCGATTGAGAAGAAACTGAAGATGCTTAGAAAGGAAAGTGAAATGGCTAAAAAAGAAGAATCTAAAGCAATCAAGAAAGAAGAAAAGGGACATAGTAAAAAGAGAACCAAGAAATCGAAACATAAACACAAAAATAAAAATAAAGGTGAAGGACAAAGGGAGATAGTGCCAACTGAAGATTCATTCAGTTTTCCTCCCGGAAAGATTTTTCTTGAAGAAATACCGGGACTGCTGTCCGAACATGCGTACCGAATAGACCGGAAACGAGACAAACTCCTCTGGACATACAGCAGTCTGTGCAAGTCTCACATTGCCACCTTCCGGCATCTTACACGTCTGTGTTTGGGTTCGACGGCAGACAACAAGATATTTGTGGACAACAACTTTAAAAAGTCAAAGCAGACAAACAGTTCCAGCCAGGATCGGTACTTCTCTAAAAAGAACAGGAAATTTGTTTGGTCAACCGGTGTTACACTTTCTGCGACAGATTCATCTAAAGATGAGAACTGTTTCATAAATTCTCACATTCGGTTGTGCGAAAGTGGGAATGTTCCAGGTGTGAGTGCGAAAGGAGGAGAGAATGTTGATCCTTTTGGAATCATGGACAAATCCACTCGGTTGTATGTACAGGGAAAGGGGGCCACAGAATCTGAAGATGACGACGATGACAATGATGACATCATAAGTACATCTGGATTTCAGATGAGTGATATCTTACAGAAAGTCGGGATTTACAACAGAAGACTGAGAGAATCTCCCCGCGATGTCGACCTGTGGCTGGAATTCATCAAATTTCAGGACCACGTCTTCGAGAAACTCCACACCCAGGACAACAAGACCCCTAAAACGGAATTCATATCGTCTTCCAAGGCAGCCATAGAAAAGAAACTGTCAATCTTTGACAAGGCTTTGCAAGCTAATCCGTCTTCGCTGGAGTTGAAGGTGGCACGGTTGAAGCTGAGCGAAGACGTGGCGATGCCGGGGGAGGTGGACAAGGCCTGGGATGACTTGCTGTTTGTTCATGCTGGCAACGTGCGTGTGTGGAGATACTATCTCCTGCACCACCAGTCGAAGCTGTCAGGGTTTTCCGTGTCGCGGATGACCAAGTTGTACCACAAGTGTCTGAAGACACTGATCATGGTCATGGAAGGACGATTACACTCTGCAGATGTATCGGACAACCTGCAGGATGGAATGATCGATATTTTTGTCCAGTACTGCTATTTTCTTCACCAAGCCGGCCACATTGAGAAGGCAGTGGCAAGCTTTCAGGCTCTCATAGAATTCAACATTTTTCTACCTCCCTCACTGAAGAATTCCTCGACTGATGACAAAGCAACAGTGTTTGAGAGTTTCTGGGATAGCAGTGTGCCCAGGTTTGGAGAGGGTGGCGCCCGGGGGTGGGCAAAATGGATGGAAGAAAAATCCATGTCTAACATTGCAACACCAGTAATATCAGAAGACACCCTTGAGCTGGAAGAAGAAATCATATCACAACAGCTGCCTAAGTGTGACACCTGGCTCAGAATCGAAACATTACGCGAATCGTTTCATTGGTTGCCATGGCGACCCGACGTCTCAAAGAACGAGACGGAGGAAGACTGTGAGGACCTGGATAGACTGGTTCTTGCTGATGATGTCACACCGGTCTTGTTCTCTGTCGTGGGACCCGACCCGCATTTTAGACTGATGGTGGAGTTTGTGCAGTTTCTTGGATTGAACGTTCGCCAGGCCGTTCTAGCTCGTGGTACTTTAAGTCAGTCTTCAGAGTATGGTCAGTTTCTGATGGACAAACTCCATGCGGTCTCCTCTGACATGAGAATGGAGACTGGAATACAGGTTGACAGCACATGGATACCGCCCCCGTCTCTGCACACCTTCCTACAGCAGGTGTTAAAACAAGGCAGTCAGGTGGTAGTGGACTCTCACCAGCAGACGTGTCTCACTCTCCTGAAAATTCACCTCGAGTGTGTCAGACACGGGACTCCGCTCAGGGAACTGTCCAAACACGGGTGCAAAGAGCTGAGGAAGTTTGTCAAGAACGTCCTCAAGGAACCCCACTGCAGAAACAACCTCGTGATCTGGAACGCGTACGCCAAGATGGAGTGGCAGATGGGCAAGAGGAAGGATGCGGTGGGGGTTCTCGAAACCGCTCTGGGGATGTTTTCACAGAACTGTGCAGACGACCAGTATGCCGGTCTGTGTTCGTTGTACCAGACGTACTGTGATATCATCCTCGGATTCAGTCCCGAGCGGACCCTGGTGATAGGAGTGAAGGACACGTCTACTTTTGAGTCTGCTCGTGACCTTGCCCTTTCTACTTTGTCCTTTCTGGCAGAAGGTTCACAAATGAAACCAGGATGTTCTGCTGACATTTCCGGCAGCCGAGTGTTGAAAATCAGAAAGCATTTTCAGGAGAAGTATTCCAAGCTAATGGAAAATTTCCAGACGACAGCAAACGTCAAGGCAGCCGACCTTGTCCTTCAGCATCTGTCATGTATGGCAACCTTTGACCTCTGTGCCATTGGAACAGACTCTGCTCTGTCACTGTTTGATGAGACAGCAGGAGTGTGTAGATCTCTAGAAGAAATGGATAAAGAACACCAGCCACTTGTCCGTCTGCTAAGGGAAGAGATTTTACACCGAAAGTTGTCTCTCATGCAGAATGTGTTCAGTACAAGAGTTATGTCCCTGGACAAGTTGAGGTCCGTGTTGAACAGTAACCTGGAGCAGTTTCCGGACAGTCCGTTGTTCCTGGACTGTCTGGTGGTCGTGGAGTCCAGGTCACACATATCTGGGAGACTGAGGCGCCATTTCGATAAGGCTCTCTCCCGTATGGGTTCGCCTGTTCCTGTGATATTTGCCATCCTCTCCGAGATGTTGAGACAGCATTATGTTCAGGCCCAGCTGCAGGACGGATCCAGCTATGTAAAAGTGGCGTCGTTAAATAAAACAAACTTTACTTTACTTTTTGTTTTTCCTACAGATGTCACTGTTGTGAGCGAGACTGGAATCGTCCACCGAGTGAGGTCTCTGTTTGAACGAGGACTGGAACACAAGGCTGCAGAACACTGTCCACTTCTGTGGAGAATGTACATCCAGTTTGAGGTGAAATATGGCAGTACTGAACGAGCGAAGGGAATCTTCTACCGATCTCTACAGCAGTGTCCATGGGCAAAGGTTCTGTACAAGGATGCAGTGAGTGTGTTTGGAGCGGAGCAGCTACAGGAGGTGGTGGACCTCATGACTGAGAAGGAAATACGTATACAGATACCAGTGGAGGAAGTCGACCTTCTGATGGCTTCAGAACCGGCTGCTGCACTCCAGGGAGAGTCGGACGATGGCATCATGTTGGACGATGATGCACAATCTGGTGATGGTGTGAAGTCAGATGATGGTGTGAAACAGAATGATGGGTTAGAATCTGGTGATGGTGTGAAGTCAGATGATGGTGTGAAACAGAATGATGGGTTAGAATCTGGTGATGGTGTGAAGTCAGATGATGGTGTGAAATAG

Transcript

ctg431-3.25-1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08424	NRDE-2	NRDE-2, necessary for RNA interference	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003107	Repeat	HAT (Half-A-TPR) repeat	Interproscan
IPR011990	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR013633	Family	siRNA-mediated silencing protein NRDE-2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13471	TETRATRICOPEPTIDE-LIKE HELICAL	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0006396	Biological Process	RNA processing	Interproscan
GO:0031048	Biological Process	regulatory ncRNA-mediated heterochromatin formation	Interproscan
GO:0071013	Cellular Component	catalytic step 2 spliceosome	Interproscan
GO:1902369	Biological Process	negative regulation of RNA catabolic process	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for ctg431-3.25-1 global RNA-seq network