Gene detail

Detailed information of ctg41-6.23-1 in Gigantopelta aegis Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
ctg41-6.23-1	PACHYTENE CHECKPOINT PROTEIN 2	chr1	17621776	17641271	-

Gene Structure

More details in Jbrowse Sequence

CDS

ctg41-6.23-1

ATGTTTACCTTGGTGAACTACCGTAAACCAAAGTCACGGTCGCCCGTGACCCGGTGTACGCGACGCGGAATGAAGCTATCATACCCCCCAGGTGGGGTAGGCACTGCTAAAAGTTCTGTAGTGAAGGACCATGTCTGTAAACTGCTGCACAAACAGAAAGTTGCGTATAGTGACTTTACAATCACAGAATTCGCAGATCAGTTTCTTTCTGAACATGTCAAGTCTGTGACCTTAACTGACACAGATATTACATCACACGGCAAAACGGCTATTGACCTGATCTCTGACACGATACACATGCACGTGTTTCACTTGGACATGGGAGGGCCGGGAACGGAGGAACTCGAGGAAGAAGAAGACCTCGCGGCAGCTAGTCAATGGCTGCTCCCATCAGCAGACTTCGAGGGTCTCTGGGACAGTCTCGTGTTTGACGATGCCATCAAAGAAAGATTACTAAATTACGCCAGTACGACTTTACTTTTCTCCGACAGAAGTGTCAACCACAACATCATCAGCTGGAACAGAGTGATACTTTTACATGGTCCGCCGGGTACAGGGAAGACCTCGCTGTGTAAGGCGTTGGCGCAGAAGCTGGCAATCCGACTCTCGGACCGATACACGTACGGTCAGCTGCTGGAAATTAACAGCCACAGTCTCTTCTCCAAGTGGTTTTCAGAGAGTGGCAAACTTGTGATGAAAATGTTCCAGAAGATTCAGGAGTTGATAGACGACAAGGAATGTCTCGTCTTTGTCCTCATTGACGAGGTGGAGAGTTTAACGTCAGCTCGTAAAAGTGCAATGTCGGGAAATGAACCATCCGATGCCATTCGGGTTGTGAATGCTTTGTTAACACAGATAGATCAGATTAAAAGATATCCGAATGTGTTGATCCTAACCACCTCCAATGTGACTGGTGCAATCGATGCTGCCTTCGTTGACCGTGCTGATATCAAACAGTACATTGGTCCACCTTCTCCGTGTGCAATCTTCAAGATCTATCACTCGTGTTTACAGGAACTCATGAGAGCCCTCGAAGTGATGAGATTCGTCGAGAACGACGCAACTCGGCTCAGTCTTCTCCTACGCAACGTTGCCATCAAGAGTGAAAGTTTAAGTGGCAGAACACTGCGAAAACTTCCATTTATAGCACATGCTGTGTTTGTACAGGCACCAAGTATATGTCTGGAAGACTTTATAGCGGCGTTGTCAAAGGCTGTGGACAGACAGTTCCAAGAAAGAGAAAACCTTGCAAAAGATTTATGAGATTTGACACACTAATGTTGAATTTTTACGATTATGTGAACGGACGGTGAATTGTACAAAGATCCTGATTACATTAATATGTAAATAGAGAGTAGTAGATGCTGAATGATCAGTGTCTGTATTTATCTTATACTGAACTCCATTGAAAATGCATCAGTTGGATTTATAGTTGTAAAAAGGATATAAGAATGCTGAATAATCAGTGCCTGTATTTATTTTATACTGAACTCCATTGAAAATGCATCAGTTGGATTTATAGTTGTGAAAAGGATATGAGAATGCTGAATAATCAGTGTCTCTATTTATCTTATACTGAACTCCATTGAAAACGCATCAGTTGGATTTATAGTTATGAAAGGATATGAGAACACAAAATAATACAGGGCTAGATATGGATAAGTGGAGCATTTTATCAAATTATCTATTAAACTATAGAAACCCAGTTATGTTTTTAACAAAATATCAGTACAGGAAATTATTTTGACAAATTAAACTACAGAAACCCAGTTATGTTTTAAACAAAATATATTAATTATTACTTGAAATTATTTCGCAAATTAAAATAAAATTTGCCAAGTGTCTTTAAATTTGGCTATTGGCAAATTTGGAGAGTGCCAGAGCTAGATAACTGGATGTATTCTGGTAAACAAAAATAATCCCAAAATTGTATACAAGGGTTAGAGTATTGTGTGTTTTACGGCTACCTCACACAGGGCACAATATTTCACGAGAACCGTTGTTCTGTTCATATGTCAGTTATGCGACTTTAAAATCATGTGAAACGCCAATTGGTTACGTGAGGAACAAATAATTTCTAAAATTAAAAGATCCCTATGAGAAGTCAAATTGAAACTCATTTTATTTTACAAGTGTTTTACAGTTCGGTATGTCTAACTCATCAGTTACTATCAGAACTATATTCACGTAACCGAACAATCGGTTACCTAAGTAAAGCTCACGTGAACCGACTTCCGGTTACCTAAGATTTTGAAATGTTGTCCCCTGCTCATACATAAGATACAATGTAGCAGTAACGATTGAAAATGGGTGATGTGTTTTGAGTTGTGTTCAGTATATAACATTGTGTGAAGTATCTGAAAATATCAATGAAATAATAGTGCTGTCAGTCACTAGTGCAAATGACGGCCAGAAGCTGTTATTTCCACAGTAGAAGGTTTTGTAGATAGAGATTATTATACAAGCTTGTGTGTCATACTATTTTTACGAAACAAGTGTCAGGATTTTTGTATTGCCCGAGCGAGAACGAGGATAATACATGAATCCTGACACGAGTTTCGTAAAATCAATATGACTCGCAGACGAGTGTATTAATTTCTTTATTATCCATAGTATTATTGTCGTTTTCTTTATGAATAACAAGACCCAATTCAAAATGTTTCAGCCACAACTAGAAGGAGATGACAAAATGACGTCATATTTCAAATGCACAGTCTGAGCTAGGACTGGGGAAGCATCGTCATGTTATGATGTCGCTTCCCAAAATTACGTCATTACACTTATTACATGTGTGCTTTGTATGATTATTATTAACTCGGTTATGCTGAACCATATGGATATTAAAAATTGTTATTTCATTATAAGTGACGTCACTAATGGTCTTGGCTAATCATATTTGGTTTCCATAATGCAAATTGCTGTGGTTTGAACTGGAAGTGGATTCCATTATGTTAGCCATTGACAAACTGGCCGCTGAAAGCACATCAAAGTGAACAGAAAGTCTGGTGTGTTTTTGTTTAACGACACCACTAGAGCACAGTGATTAATTAATCATTGATTATTAGATATCAAACATTTGGTAATTCCGACAAGTCATCAAAGGAAACCCACTACATTTTTCCTAAAGCAGCAAGGGATCTTTTATAATATGCACTTTCCCACAGACAGGAAAGCACATACCACGGCCTTTGACTAGTTGTGTGTTGGGTGGGATTTAGCTCAGTTGGTTGAGTGCTTGTGTTCCTGGATCGAACCACCTTTGTTGATCCATTCAACTGATTGGGTTTTTGGTTGTTCCAGCCAGTGCATCACAACTGGTCAAAGGCAGTCAAGTTGAAGTTTGTTTACGACACCACTAGAGCACATTGATTTATTAAGCATTGGCTACTGGATGTCAAACATTTGGTCCAATCTAAACAAATGTAATTTGTTATTCTACACTGATGTCCAAAAAAATCTTTACATGCCTTGAAATTGCATTATAGAAAACCAACAAACGGGAGTTCAACATCTAAACGTCACAATGCACTTTTTGATACATGCAGTGTTTAATTCTTTCAACTAGCAACAATATTTATCAGATTATTCAAATTATATATATATATATAAAGATTCTTATGGACATCAGTATATGAAGTTACCGTGACTGGATTGAAGTATAGGAAAATTACAATAACCTTTTACATAAGTTTATTTGAAGAAAAAAATAGTTTTCACATGTACAAGGAATGAAATTCAAATGGAAACAAAAAAAAAAGAGAGAAAAAAAGACTCAAATATGTGGCCAGGCCCTGTAGCTAAAGTCTGGAAACTACTAAAGTTTTCTTTTAACACCACCACTAGAGCATATTGTTTTATTTATCAACAACTATTGGATGTCCAACATTTCAGTAATTCTGACATAGTCTTAGAGGAAACCTGCTACATTCTCCAATTAGCGACAAGGGATGTTTTATATTCACTTTCCTACTGTCAAGACATCACATACCATTACCATTACCATTATATTCATTGGTGTAGAGGTCGGGAAAGATGGGCACATGTGCTGTCTATACATCATGTTATGGAGCGATGGGCAAGTATAAAAGGTGATGGTGGGTGGAGAAGAGGTGTGATTGGGATGGACTGTAGCCCCATGCACAAACACATGCACACACACACACACACACACACACACAAACAGCTCCATCAGTGATTACATTTTACTTCATTTGATTGCGTTTTAGTTATTGAATTCGGACTAAGAAACGTGTATAAATGTTTTGTGTACAAATATGTGGAGACTTGTGCTGTTATTAAAATTACTCGCATGCTATTTACAACCAAATGTTTTTGAGTTTTTATTTATATAAATCAATCAATCAATCTCAATCTCAATCTCAATCTCAATCTCAATCTC

Transcript

ctg41-6.23-1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00004	AAA	ATPase family associated with various cellular activities (AAA)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001270	Family	ClpA/B family	Interproscan
IPR003593	Domain	AAA+ ATPase domain	Interproscan
IPR003959	Domain	ATPase, AAA-type, core	Interproscan
IPR003960	Conserved_site	ATPase, AAA-type, conserved site	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR044539	Family	Pachytene checkpoint protein 2-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45991	PACHYTENE CHECKPOINT PROTEIN 2	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0005694	Cellular Component	chromosome	Interproscan
GO:0007131	Biological Process	reciprocal meiotic recombination	Interproscan
GO:0016887	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0051598	Biological Process	meiotic recombination checkpoint signaling	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for ctg41-6.23-1 global RNA-seq network