Gene detail

Detailed information of ctg344-4.1-1 in Gigantopelta aegis Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
ctg344-4.1-1	NUCLEOSOME-REMODELING FACTOR SUBUNIT BPTF	chr8	70211697	70232699	-

Gene Structure

More details in Jbrowse Sequence

CDS

ctg344-4.1-1

GAACGAAGAGAATGTCCGACAAAGTTGTCAAAGCAGTGGTTTTATTTTATTTTTGTTGCTTGTTATTCCAATAATGCAATGGAATAAATAAAGGACGGAAGCATAATTTGATAGGAAAGGAATCCCAGATTTTCGAGTGTTATGAGTAATAAGCATAATACTAGGAGCTGTTTCCTGATGGTAGCATGACTGACCCACTGAAGCCAGTTGTGGTAGAACTTCATCCAAATTTGACTGTACAGAGAAATCCTGGCCATGTTCAGAATGTTACAGTTATTATTGATGCAGAAGGTCATTTGAAGGTGTTACCAGAAATACCTAGTGCTGAAGTCGGTGAAACACAGTCTAGTGGAGACGATAAAACATGTCAAGATTTGTGTAAAACAGAACAGTTCAGTATGTGTCAGCAGCAGCTTGTTGTTAACAACAATCAAAACTTCGAAGACAATCTGTGGATTAAGAAGGAACCAATAGATACATACGACAGCCCACCAGGTGGAGACACTGCAGATTGTGATAATATTCCAGAATATCGGAACTCCGGTGAGGTGAACCAATGGATAAAGAACGAACCAGTAGATATCATCGACAGAAAGCCAGATTTAAACAGTATTAATAACTACCATTCCACAGATGATGATTTGTATGGACAACAGAATGATGAGGTAGAATCTAACTGTCTTGGGGAGAGAATCTATCTCCCGTACAACACGAAACTAGTTGAAACTGATGAAGAAACTGATTCCCTGCCAGATGCTGTTGATCCCATTCTCTCCGAAGATGAACTGAAGCCCAAGAGAAAATATGCTGTACTGACATTGTCAAGTGGAGAACGCATGGCTATTCCTGTTCTTAATGTACCTGGGAACCAACATGCATTTCAACGCTTCACCAGTGACAGTAACAAGAACGTTTTGGATTGGAACTCAAATGCAGCTGTTCATCCCTGTATATTAAAAAAGAACATATGGGCAACAGAGAATGGTCTGACAGTAGCTTCAAGTTTCACCAAGAGCAACTGTCAAAGACAAGAAGAGAAGATGATGTGTTACTGGAGACTACCACCAAGGAAGAAACCTGTCAGTGTTACTGCTTTGCTTAATCGGCACAAAAACTGCCTGAAAGTTGCCATTATGAAAAAGAAGTCCAATTTAGAGAAAAAAATTCAGCAAGAAGTTAATATGGAGGTAAATAATATAATCAGAGAACATGAATTTTTGAAGAGAGAGGATGAGAAAAGACAACGGCTGCACGAGTCTGATTCACAGTTTTGTTCCATATGTAAAAATCCCATCGATGAAACTGGACTGTATGTGGACTGTGACCTTTGTTCCTCCTGGTTCCATGGGTCGTGTGTCGGCATCACTAACATGAAGCTCCAGGTTATTGAAGCGTTCCTCTGTAACGAGTGTAAGGAGCAGCAGGATTCCACGTATCAACAGTTACACTGTATTTGTAAAACACCACTTGACGACGGAAACAATGGCAGTGATGTCAAACACCCTTGCAGTATTTTTAGTCCCCTACTGAATCACAAAATGGCAAAAACACTGAAAGCTACAAATGTCACAGCAGAAAATCCCAATGGTGCTCTTATTGAAACACAAACTATAGATCTAAGTTTAGTGGAACGAAGACTGGTTTTAAAACATTACGAAACTCTGAGTGAGTTTGTCCACGACATGACGACCATGTTTCACAACTGCCGATTAAAGAACCCAAGTGAATCTGCAGTGTATCAGTGTGCAGAAATTCTAGAATCTTTCTTTGTGCAAAAACTGAAATCATTAAAAATTAAATGAAGAGATTGTTTGTCATTTCCGAAACACTAACCGTACCTACTGCTTAAAAACCTTTACAGTCTAGACTCAAAACTCTCTCCTAACCCCTCTCTCTCCTTCCCTACATCTCTTTCTTTCTTTTCTCTCTTCTTCCCTTCCTTCCACTTCCCCCTCTCTCCCCCTTTCACTCTCTTTGTCACTCTATCTGTCGCTCTGTTTTGTGAACAATAATATAAACTTCCACTACCTGCTGTTTGTATCGTCAGTACTTTATTAAAGCATCAACTCTAGAGTTTTATAAGTACAGGCCTGTTTATTGTTCAGTTCATTCAGAAGAACGATTGATGAATATTATTTTAAAAATGACTGCAAATGTAAACAGTTTAGTTCACAACTACATGTACTTGGAAACCAAATGTGTACTAGTGGATATTGTTAGGAATAAAAATGTTAACTTAATTTGAATCTATCCACCGAATTTAGGGAAATTAGAACCAAAACGGTTTCTATCACTGAGTATGAAAGGTACAATTGCGTACCTTAAGATCTTGGAAATTAATAGATATAAAGGATACTCCCGAGTGTCTTTGTGATATCATGATTTATCAGCACAGTATGAAAATTGAGGCTTGCCGAGGATTTTTATACCTTTTTTTTTTATCCTGCAAGCACTTTCTATTGACAGTTTATGATGAGCGCTTAAAGCAAAATCATAAACGTATACTAGCAGATTATGACTTTTGATGTCACTCCTATGACGTCACATGTATAGCTATATTACAAAATTGTTCATTTGACCTCTAGGTCATCTTACAATGTGGCAGAAATAACAGAAATAATAGCTTTCCCCTTAATGTTTATGGTCTGCAGGATAAAAATAATAACTAGTTACTGATGTTGGATATCTGCTTTATCCTATTCAGGCCGAAATAGAAATTCCGCTTGGCAGAGGCTCGCAGAATTTCCCATTCTTACCTTCACAGGATAAAGCAGATATCTGACGTCGTTAACTAGTTATTCTCTATATCAAAGAGTAATGATAAATTATGATATCACAAGACACGAGGGGGGTATTCTTTTTTTCATCCATTATCATTCTTTTCATTTACCAAAATTGTAAACAAGGTCAGTAATGTGGGTTGAATGTCACTATATTTGGCAGCAGTAGACTCGTTTACTAGCAGAACGACGTGGCGTGACGTCACTAATGATAGGTTTTGCACTGAAACATACAGTGATGTAGCAAAAGAAGTGTATCTCCTTGGAGAATATTGCAGGAGATGACCTTAATTATAGTGCCTACGAAAGCCTTTAATGGATGATAAATGTTTTTATAATTTTTATAAATAATAATATTAAGAGAACTGCTGTTTATAATTTGTCAAAGCGCATTAAAGGCAGTGTTCAGTTTCAACAGATTTCAAACCCATGACCACCTACGTGACCTAGTATTAGCAGTTATGATCTGTTTTGTTTTGTTTTTATTACATACCCTCAAATTATTTTCTGACACAAGACCTAACTAAATGTCAAAAAATTTAAATTACTTTATTATTGAATATTTGAGTATGATCTGGTGCTTTTATCGTGTTAACTTTGTTTCATCATCTTCTAGTTGTATCAAGCTCATAAGCCTGTCAAGCTATGTATATGCAGACATCTTACACTGACTTATATTTCTGAATTGGTGAAATGAAAGTAAAACATCAATCAGCAGTCATTACATTGTTACACTTGACTGAATGTTTTGGTATTGGAAATCTAATTGAGAGTTGCTAATTTACACAAGACCGTATAATAGATACTTAATACAGGCAGATATGCAGGGGGTTTTCAGGGGTCAACCCCCCCCCCCCCCCCCCTGCTCATTAAA

Transcript

ctg344-4.1-1

Protein

Gene family

Gene family	Subfamily
Ubiquitin Family	E3\|E3 activity RING\|PHD

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00439	Bromodomain	Bromodomain	Domain	Interproscan
PF00628	PHD	PHD-finger	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001487	Domain	Bromodomain	Interproscan
IPR001965	Domain	Zinc finger, PHD-type	Interproscan
IPR011011	Homologous_superfamily	Zinc finger, FYVE/PHD-type	Interproscan
IPR013083	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR019786	Conserved_site	Zinc finger, PHD-type, conserved site	Interproscan
IPR019787	Domain	Zinc finger, PHD-finger	Interproscan
IPR036427	Homologous_superfamily	Bromodomain-like superfamily	Interproscan
IPR038028	Family	Nucleosome-remodeling factor subunit BPTF	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45975	NUCLEOSOME-REMODELING FACTOR SUBUNIT BPTF	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000978	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0016589	Cellular Component	NURF complex	Interproscan
GO:0035064	Molecular Function	methylated histone binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for ctg344-4.1-1 global RNA-seq network