Gene detail

Detailed information of ctg34-11.17-1 in Gigantopelta aegis Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
ctg34-11.17-1	ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED	chr10	79567645	79591331	+

Gene Structure

More details in Jbrowse Sequence

CDS

ctg34-11.17-1

ATGTTTACCAAAATTGCTATGAGTCTGTCACGTTTCCAGGGCAGTTTGGTGGGTGCGGTGGTCGGAGATTGCATAGGGGGAGTGTTTGAGTCGATCTGGGGACCTGTGGCACTCCGGCCCATCTTACGTCAGGTTGAGGATCTCGAACAGAACTACAAACATATGAAAGATGGCAAGAAAAAACATGTGTTGTGGTACACAGATGATACAGCCATGGCTCGGAGAGTTGCAGCATCACTCATCAGCAGGACAGATCTGGATCTCAAGGATTTAGCAAAACAATTTTCTGATGAATATTACGCAGAGCCCGACAGAGGCTATGGTGGAAATGTGGTCAAAGTCTTCAGCGCTCTGGCCAATCCAAATCTTACAGACGTCTTGCAGCCAGCCAGGGAACAATTTGATGGAAGTGGTTCCTATGGCAACGGTGGCTGCATGAGAATAGCCCCAGCTGCATTATTTGCATTTAGTGACAAATTTGAAAAGCTGCAGGACATCTCGGAGAAGATAACAGAGATAACACACTCTCACCCCCAGGCGATCCAGGGAGCCGTTCTTCAGAGCAGTGCTGTAGATCTTGCGCTGCGTCTTGACAACACACACGATGTCGACACCGACATATTCATCGACACTCTTGCACAGCGAATCAAACCGCTGGAAGAAAACCACAAACCAGAGACAAAATCAACTTCACCTACTGCCAAGAAGCAAAAAAAACTGGATACATACTGTTCCAAGTTGCAGCAGATTCGAAGTTTCTTACCGCGAAGTGACGTAACTCCATCCGAGGTGGAGGAAACATTAGACAAACCTGAATTATGGGCTTTGGTAGAATACCTGGAATTAGATTTTGATAGAAGTGCTAAGAAAGGTGCAATATTAAGCATTCTCTTCCATTATTTGAACGAACAGCTTGAGGAAAAAGTTATGCAAGAAAGTATGGGAGGAAAGTTTGGTGAGAGAGAGCGTGAAAGACAGTTTGAGTTAGACAAGTTAAAACTAGAGTTAGAACGAGAAAGAGAGGCAAAAGAAAGACAGTTTGAGTTAGACAAGTTAAAACTAGAGTTAGAACGAGAAAGAGAGGCAAAAGAACGTGAGTTTGAGTTAGAAAAGTTAAAGTTGGAAAAAGATACACAGCTGCAGTTAGCTCAAGTGGAGATTCAACATAGACCTAATCATCAGGGGCCAGATATTTCTAAATTCATTAGATTTGTCCCAAGGTTTCGTGAAAATGAGATAGATACCTATTTTGACCATTTTGAGAAAGTTGCTAGAAATTTGAAATGGCCTAGGGATTGCTGGACAACTTTGTTGCAAAGTGTACTTGTTGGTAAGGCCCACGAGGCTTATGCATCTTTATCTGTTGAACAAAGTGCAGACTATGAGGTAGTCAAGGAAGAGATTTTGCGAGCTTATGAGTTAGTGCCTGAGGCTTACAGACAAAGGTTTAGAAATTACAAGAAATTTGATAACCAGACTTTTGTTGAGTTTTCTAGAGTCAAGGAGACTACTTTTGATAGATGGTGCACATCTAAGGAGGTCAACAAGGATTATGACAATTTGAAACAGCTAATCTTGGTTGAAGAGTTTAAGAGGTGTAGTCCTACAGAGATTAAGACATATTTGGATGAACACAAGGTTGATACTTTGAGAGATGCGGCTGTTTTGGCTGATGAGTTTGCACTGACCCACAAGAGTTTATTTTCTCGCAATACTCAGTCTAGAGGTGGTAGTACCACTAATCATAGCTTTCAACCCGGAAGTTTTCGAGGTCATGGTTATGGTCAGTCTTCTCAAGGTCAATTTGGAGGTCAATCTAGTTACTCTTCTATGGGTAATAGTGGACAGGGACGAGGTCAGACTAGGAATTTCAATAACTCTAGCAGTTACAGTGGCAATCAGAGAGATAGTGGCAATCAGAACGCAGGTAACTATTCAGGACACCAAAACAGTAATTCTTCTAAGAATTCAGTTCTGTTGGATCGGAGTACTATGGATGGTCAGTTGGCAGGGCCAATGTGTAATTACTGCAAGAAATACGGTCACGTTAAAAGTGGGTGTCGTTTGTTGGCTGAAAAAAACCAAAATTATCTTAAGTCTCCCAATGCTTGTGCAAATGTGTTTGTTAAGCCACCAAGTAGTTGGTTAGGCAAAGAGGTTCCAGTTGAAAAGACAAAAGGTGAGATGGAGTTAGATAATAAGGCATCGTATGATCCTTTCTTGTCTAAGGGTGAGGTTTCTTTGTGTAATGGTGATGCTGCGCAAATCACTATTCTTAGAGATACAGGTGCATTACAAACACTTATCCTAGAGGGCACACTTCCTTTGTCAGATGAGACTTATACTGGTACAAGTATTCTTATGCAGGGTATTGAGTGTGGTTTTGTCCATGTACCTCTTCATAGAATTGAGCTTAAGTCTGAACTTGTCTCAGGAACAGTTGTTGTGGGAGTCAGAGAAAAGCTTCCAATTTCTGGTGTGGATCTTTTGTTGGGAAATGATTTGGCTGGAGGTGAGGTTAAGCCTAGAGATTCACTGGATTCAAATATTTGTGATGACCCAATTGTTTGTGATGACCCCATTTGTCATGAGGACGGAGTTGTTTATGAAAAACCTATTGTTTGTGTGGATTCAGTTATTTGTGAGACTTCAGATAACGTAGAAACAGGATCAGACTTTGTAGATGAGATATTACTTTATCCTTCGTGTGTAGTTACCAGGGCTATGGCTAAGAAGGACATTCATTTGGATGATGTTCAGCCAAAACAAGTTGATTTGTCAGAAGATGTGTCAGTTGACAGAGGTGTATCAGTTGTTGAAGCTCAATCAGAGTTGATTGGTTTCTGGCAGATTCCATTGTCATCAAGGGCTAAACAAATATGTGCATTTTGTACCCCACAAGGTTTATATGAATACAATGTGATGCCTTTTGGACTAAAGAATGCCCCAGCTACTTTTCAGCACCTGATCAACAATGTCACCGCTGATGTCGACCACTGTGACGCTTACATGGATGACGTCATCGTAGCAACAAAACGATGGGAAGAGCACATAGCAGCGATTCGACATCTATTTGAGAAACTGTCACAAGAGAAGTTAACTGTAAATTTGAGCAAAACAGACTTTGTCAGGGCAACAGTGATCTATCTTGGACATGTTGTAGGTCAAGGCCAGTTGAGACCTGTTACAGCCAAAGTGGAAGCTATCACAAACTTTCCTACACCCAGAAATAGGAAAGAAATCATGAGATTCCTTGGTGTTGCAGGATATTATCGAAAGTTTTGTAAAAACTTCTCCCAGATAGCAACACCTTTGACCAGTTTATTGACGAAGAATACACAGTTTACTTGGAAGAAAGAACAACAGGATTCTTTCCAGAAGATCAAGGCTGTATTGTCAAATACACCTGTGTTGATGACTCCAGACTTTGAACAACAATTCACGATTTATGTAGATGCCTGTGATGTGGGAGCGGGAGCTGTATTACAGCAAGATGACGTCCACGGCATTGAACATCCCATTTGCTATTTTAGCAAGAAGTTTCTGAAGCATCAGAAAAATTACTCAACTATTGAGAAAGAAACACTTGGTAATGACATCTCGGCACTGGGATCAGCACCTACAGCTGTTTACGCATTTCTCAAAGCTCTGAAACCAATCAAGGGTATCGAGGACAGAAGTGGTTTTGAAAGGACAATTATCTATGCCATCCACATGGGTGGGGATACCGACACCATAGCGACCATGGCCGGTGCCATCGCTGGAGCATTCTACGGACTGGAGGCCATTCCGGCATCATGGCAGGTATCATGTGAAGGGGTTGACGATGCCAAGAAACATGCCGAACAGCTGCTGGCATTACAGACACAGACAACCAGCTTGTAGGGATTGACACGGAAAACAGAGTTATTGGGATTGACACAAACAACCAAGTTATTGGGATTGACACAAACAAACAAGTTATGGAGATTGACACAAACAACCATGTACCAGATTGACA

Transcript

ctg34-11.17-1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00078	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF02023	SCAN	SCAN domain	Domain	Interproscan
PF03747	ADP_ribosyl_GH	ADP-ribosylglycohydrolase	Family	Interproscan
PF17919	RT_RNaseH_2	RNase H-like domain found in reverse transcriptase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000477	Domain	Reverse transcriptase domain	Interproscan
IPR003309	Domain	SCAN domain	Interproscan
IPR005502	Family	ADP-ribosylation/Crystallin J1	Interproscan
IPR036705	Homologous_superfamily	ADP-ribosylation/Crystallin J1 superfamily	Interproscan
IPR038269	Homologous_superfamily	SCAN domain superfamily	Interproscan
IPR041577	Domain	Reverse transcriptase/retrotransposon-derived protein, RNase H-like domain	Interproscan
IPR043128	Homologous_superfamily	Reverse transcriptase/Diguanylate cyclase domain	Interproscan
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46888	ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
-	-	-	-

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for ctg34-11.17-1 global RNA-seq network