Gene detail

Detailed information of ctg3390-0.3-1 in Gigantopelta aegis Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
ctg3390-0.3-1	PROTEIN CBG26694	ctg3390_pilon_pilon:::debris	6265	15793	+

Gene Structure

More details in Jbrowse Sequence

CDS

ctg3390-0.3-1

TTGGTTCTCGAGAAAATAGACCCAAAAGATAATGTAACAATTCGGCGAGAAACACCTACACCATGGGATATTCAAGTTGAGGGCAGTGTCCAAGACATAAAAGTCAAGTTTATCATTGATACAGGGGCAGACAAAACATTAATATCAAAGAGAATATTTGACAGAATAGATCCTGCAATGAGGCCGCACTTAGGGAAGACAATTAAACTTACACATGCTGGTGGGGAGTCACTGCGCAATTACGGAAAGTGTACTTTGAAGATACAGCTAGGTCCACTCATCCTGCATAGGTGTGTTGTGATCGCAGACATTGCTGATGATGCTTTGATTGGTATGGATATACTAAAAGGCATAGGTGGAAAACCAGCAGATATAATCCTGAGTCAAAATAAAATTGTACTGAGTGGCGAAGAAATTTCATGTGTCCGATCAGAGAACACTGGTGTGAGAAAAGTACGAGCAGCAGATCACTTCATCATTGAACCAATGACAGAAAGAATTATTGATGCATTGGTGGATCGAACTGAAATTGATGATAGCAAAAAGACATGTGAAGTTATAATTGAGCCAACTCAAAATTTTAATGAAAATCACAACGTTGTATTAGCAACTAGCCTTGCCGATTTAAATCGTGATTCCACCGTCAAAATCAGAGTGATGAATCCTTTCTATACCTATGTTTCAATCAAACAAGACACAATCATTGGAACAGCGGAAGAAATTTCATCCGATGCAGTTAGCGAAACAGTTCTGGAAATGGAAAACATGAATGAGGTCGGCAATACTAAACGAGTTCGCAGGATAACATACAGAAATATCTCTGAAAATACAACAATCTCAAGTAGAAATAAACTTTTGATAGGCAAAGAGTCAAGTGAAAAGATCAACACTTCGGAAACTGAAAATAAACAGAAAAGAGATTTAGAAAAAGGAATCCCAGAGCACTTGATGAAATTGTACTTTGATTCCATTGAAGGAAAAGAAATAGATGTTCGTGCAGAACTTGCAAAACTGCTAATAGAATATACAGACGCATTTTCCAAAGACGATAATGACCTCGGTAGAACAAACTTAGCGGAACACACTATTCGTACAGGTGAATCGAGACCAGTGAAGCAACCACCTCGCCGAGTACCCCTGGCATATGCACATGAAGAAAAGAAAGCCATCGATAAGCTTAAGTTACAAGGTGTTATACGCGAGAGTAGTTCCCCTTGGAGTTCACCATTGGTCCTGGTGCGGAAAAAGTCTGGAGAAGTCCGTACTTGCATTGATTATAGAAGACTGAATACACTGACTGAAGCAGATGCTTTTCCTTTGCCGAAGATTGCAGAATGTTTAGATACGGTGGCAGGTTGTAAAGTATTTAGTACATTAGATTTAACTGCAGGCTACTATCAAATACCACTCAGAGAAGAAGATATTCCAAAGACAGCTTTTATCAGCAAACACGGGTTGTTTGAATTTGTCACAATGCCAATGGGTCTAAAAACAGCAGGTGCAACATTCCAGAGAGTCATGGAGTTGGCGCTGAAGGGATTGCAGTGGTCATGCTGTATGTTGTATGTGGATGATTGTGTAATACCAGCTGCTGATGAATGGGAAAATCTAAGAAGGTTGAAGTTAGTACTGAGCCGACTTCGAGCAGCCAACTTGAAATTAAAACCTGAAAAATGCATGTTGCTGAAATCAGAAGTCACATTTCTGGGGCACAAAGTCTCTGCAGATGGGGTGAAGCCAGACCCAAATAACGTTGCCAAGATTCTTCAATGGAAAGAACCTAGTAACGCGAAGGAAGTGAAACAATACCTCGGTATCTGTTCTTATTACCGTCGTTTTATCAAAGATTTTTCCAAAATCGCCAAACCACTGTTCGATCTCACTAAAGATGATAGCAGTTTAATTTGGACAGAGAAGTGTCAAATAGCTTTTAATACATTGAAAGGAGCACTTACAAGTCCTGACATAATGTCGAGCCCTGCTGGTGACGGTAAATTCATATTGGATACCGATGCATCAGATGTTGCAATAGGCGCAGTGCTATCCCAAGTTCAAAATAATCAAGAAAAAGTAATAGCTTATGCTAGCCGAACACTGTGCAAATCAGAAAGAAATTATTGTGTCACAGATAGAGAATTGTTGGCAGTTAGGTATTTTGTAGAATACTTTCACCACTATTTGTTAGGGAAAGAGTTTGTAATTCGATCTGATCATCAAGCTCTTAAATGGTTGATGAACTTCAAAGAACCAAAGGGACGGATAGCCCGTTGGATAGAAATACTATCTGCCTACGACTATAAAATAGAATTTCGCAGTGGAGCTCACCATGGCAATGCAGATAGTATGTCGAGATGTCCGAATCACGATGATTGTGATTGTGCTGAGGCAGGGTTAACAGAACAATTGAAATGTGGTCCCTGTAAAAAGTGTCAAAAGAGGGCTGATGACATGCAGAGTACTTTGTCATCTTCACTAAAAATACGACAGAGTGTTTACTTCGATCGTGGAGCCGGGGTAATGAAAAACCCGAAATGGTATCTGCGAAAGTTGATATCTCCATTGGTAATCATGATTTTATGCATGATTAGCGTTTTTGTTCCAGGTCATACCAGTAGTGTAACCCCTGTCACAGAAACCGTGGGAGAATGGTATGTGGGCTCGAGAAAAGGACTCGAGTATGTGTACAAGAAGCTTATGAAGAAACGGGATATGTTCAAGCTAAGCAGAGGGTTAGCAGTGAAAGCAACTGGTTGGCTGATGAACTATTTACGCTACCCAACACACAGAGTTGAAGAGTTCTGTAGAAGAGTTTCTACAAGGGAGGAAAGAGAACTGAGGAATAACTGGTTTCCGTGGATGCAGATTATGGGTTCAAGTGAGTTGCGACGTAAGCAACTGAGCGATGCGGATTTGAAACCCATTATTGAGTGGATGGAGCAAGGGAGACGACCTACTGGTCACGAGGCTTGTACAGCCAGCCCTGCTAGCAGACACTATTTGGTGTATTGGGACAGCTTGGTAATGAAACAGGGAATGCTGTTCCGGAAATATAGTGACAAAGACTGTACAGAGAGGTTACAGTATATTGTGCCAAGAGATATGAGAAAGGAGATCTTGTATCAGATGCACAATGGGATAATGTCTGGTCATTTGGGCAGGAAAAAGACCAAAGGGAAACTTCTCGCTCGTTATTATTGGTTTAAAGTGCGAGAAGATGTGAACAACTGGATTTTGCAGTGTGAGACTTGTGGGGCCAATAAGCCACCTAATAGGACACCGAGAGCCCCATTAGGAAATATGCAAGTGGGAGCCCCGCTAGATCGGATTGCTACGGATTTCCTGGGACCATTACCTAGGACTCCAAGAGGAAACAGATACATTTTAGTTGTAACTGATAGCTTCACCAAGTGGGTTGAAGTTTTCGCAGTACCAGACCAAAGTGCAGAAACCGCGGCTAGGATGATACTCAACGAAGTTATTTCTAGATACGGGTACCCTCTGGATTTACATAGCGACCAGGGGGGAAATTATGAAAGTGCTATATTCAAAGAACTTTGTAAACTGCTAGAAGTTAGGAAGACGAGAACATCGCCACGTAATCCCCGCTGTAATGGACAGACAGAAAATTTCAACAAAACTCTGGTCCGGATGATACGAGCATATCTGCAGGGTGAACAAACGGATTGGGATCTGCACTTAGGTTGTTTAGCAGCTGCATATAGATCAACCCCACACGAGAGCACAGGCCTAACACCCAATCTCTTGATGTTGGGACGTGAAGTGAGAATCCCAGCGGAAATAGCATTCGGCAGTGGTACCTCACTCATCGGTGAAACTGTGTCATCATATGGCCAATATGTAGAAATGCTGAAAAGAAACATGCAAAAGGCGCATGAGATAGCCAGAGAGCATTTGAAAGCGTCAGCCAAGAGGCAAAAAGAAACATATGATATAAAACAAAGTCTTCATCGGTATAGCCAAGGAGACCTAGTATGGTATCTTCATGAGCACAGAAGAGAGGGAGTATGCCCAAAACTCCAAATGCCTTACAGCGGTCCAGCAGTTGTGGTTAAAAGACTGAATGCACTCGATTACATAGTTCAGTTCGATGCTGAAGGAAATTATTTAGTCATGCAGGCTCAAGTCAAGTTGCCACCAAAGAGAGGAAGGGCGTATCGATGTTTAAAGGGAGATGACTTCGTGGGAGAGAGGGGAAAAGTAATTTCCCACATCTACAAGATGCATCTACCTCTTGACCAATCACCATATTTTTGTACTTTATGCACCTTTAGATGCATGAAGTTGGAGCAGCTGGCAACGCATGTGTCTGCGTACAAAGACCACATAGACAGGGTGAGAAGAGCGGAGGAAAGTGGAGAAGAGGTGGATGAGGCAATCCACTTGAAGGAATCTACTTGTCCGTATATAGTAGCAGATGGCCTCGACATGGAGCGGTTGTCAGCTGATGAGTCCAATAGTCTGTGGCAACAAAGGGCAGGTCAACGATTTAAAAACAACACTGTTTCTAAAGCTGTCCAACCATTGCCAGCACCTCAGCCAGTGACGGCCATATGTGTCCCAACAGCAGCACCAGTCACCACCACAACATCGGAACCTTCAGCAACTGAAGTGACAGTGGTCGAAGCTATGCCAGACAACTTGTCATTATGGAGTTTTTTAAACTCCCCAGCGGAGATCCAGGAGCCACCTTCAGCGATTATTCCACCAGCTGTCGAGGAAACTCAGAAAAGACATTCCAGGTCCCAGTCGAGGTCACGGTCGAGATCTCCCGAGTCTTCTGCTTCATCAGATAGCTGTAGAGATCAAATGCTGGCCACTGTCAACATTACAAGGTATCTCTACACAGATGACATCACAATGGATGGTGCCAATGTAATGGGTTTGTTGTACGTATCAAGTAAGTATGACGTCAAAACCCTGGAACAGAAGTGCCTGACGTATTTGCCGTCATTGATGACGCCAGACAACGCCTGTGTGATACTGGAACAGGCCCACTTGTTTGATGAGCAGGAATTGAAAGAAAAAGCTCTGACTTGTATTTTGGCAAATGGAGATGCCGCTCTACAATCAACTGGAGTTACCGACCTTTCTCACGAATGCTTGGCTAAGATTATACAAGCGGAAGAACTGGAGGTCGATGAACAATCTGTCTTTGAAGCTGTTGTGGCGTGGAGTGAGACTGCGTGCAGGAAACAGAACAAAGATGTAACTCACGAAAACAGACGACAAATGCTTGGGGAAGCCATAAAGCAAGTGAGATTTCCTCTACTTGACCACAGATACTTAGTGAAACATATAATACCAACTAATCTTCTGACTGATGCAGAAAAACTCAAGATCTTCGCAAACTGTCTGTGTCCAAATGAAAATATTTCACCGTTTAACGCCAACAAGCGCACAGGTACTATTCGTCGAAAGAACATTACAATACAGCGCCTCACCAAAAATAATAAACATGATATGACATCTTCCAATGACCATTCAATTGTGTTTTCTGTAAACCAACACGCATCACTGCAAGGCTTCTGGTTGTATGGTCCCAGTAACAGCTCTACTGCACATTATCACATCCGAGCTTTCATAACTGACCCGGAAGTAGATGACGTAATCGAAGGTTCATCAATGAAAACGTCAGTCGAAACTTCTAAGACAATATATGATGTGACGTTTCCTCGACCCCTAAAACTGAGGAAAGACAAGGTTTACAATCTGATTGTTAACCTCGATGGGCCTGACTCACACCGTGGTATGTGGGGTAAATCTACAGTACAGCACGGGTCGTTTGTGTGCTCGTTCTTCAATCGCCAGGAATCCAAACACAGTAACAAACTAACCGGTTGCACAGGTGTAGATGCAGGACAGATACCTGGTTTGATGTTCTTAGTATGA

Transcript

ctg3390-0.3-1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00078	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF00665	rve	Integrase core domain	Domain	Interproscan
PF07707	BACK	BTB And C-terminal Kelch	Domain	Interproscan
PF08005	PHR	PHR domain	Domain	Interproscan
PF13975	gag-asp_proteas	gag-polyprotein putative aspartyl protease	Domain	Interproscan
PF17917	RT_RNaseH	RNase H-like domain found in reverse transcriptase	Domain	Interproscan
PF17921	Integrase_H2C2	Integrase zinc binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000477	Domain	Reverse transcriptase domain	Interproscan
IPR001584	Domain	Integrase, catalytic core	Interproscan
IPR001969	Active_site	Aspartic peptidase, active site	Interproscan
IPR001995	Domain	Peptidase A2A, retrovirus, catalytic	Interproscan
IPR011333	Homologous_superfamily	SKP1/BTB/POZ domain superfamily	Interproscan
IPR011705	Domain	BTB/Kelch-associated	Interproscan
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR012983	Domain	PHR	Interproscan
IPR021109	Homologous_superfamily	Aspartic peptidase domain superfamily	Interproscan
IPR036397	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR038648	Homologous_superfamily	PHR domain superfamily	Interproscan
IPR041373	Domain	Reverse transcriptase, RNase H-like domain	Interproscan
IPR041588	Domain	Integrase zinc-binding domain	Interproscan
IPR043128	Homologous_superfamily	Reverse transcriptase/Diguanylate cyclase domain	Interproscan
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR050951	Family	Retrovirus-related Pol polyprotein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR37984	PROTEIN CBG26694	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0004190	Molecular Function	aspartic-type endopeptidase activity	Interproscan
GO:0006508	Biological Process	proteolysis	Interproscan
GO:0015074	Biological Process	DNA integration	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for ctg3390-0.3-1 global RNA-seq network