Gene detail

Detailed information of ctg302-5.14-1 in Gigantopelta aegis Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
ctg302-5.14-1	BREAST CANCER TYPE 2 SUSCEPTIBILITY PROTEIN BRCA2	chr10	46589859	46600761	+

Gene Structure

More details in Jbrowse Sequence

CDS

ctg302-5.14-1

ATGTGTTCAGTTGAATTTCAGACGGCTTCAGGAACATGTGTTGATGTCGTGCACGAGTCTTTGAGTCATGTCTCAGACTTGAGTGAAGAATCTAGATTGGACAGTGTTAGTCTAGTTTCAGAAAGAAAGAAAAATGATAACGCATTTCAGACAGCTTCAGGAAATGCAGTAATAATATCTGATTCTGCTCTGAAGCAGACAAAGAAAATGTTTAAAGATTTTGAAAACAATCCTCTTGAGGACAGTAGTTTGCTTCATATCCCATCAGGAAATAGGAAAAACATCAAGGAAGAAACACAACACATAGAGACTATGTCTAGACTAAATGAAGGAAAAGAACCTGCAAGTATTGATATAAGCAAGTTGGAAATTGTGTCTAGTAATAATGAGACGACTAGAACGTGTTTAAAGTGGGATGAAAATGAAAATGTACAGGAAAAGAAAGGAGATTCTTCTTATTCAGGTCGGTGTTCAGAGAACCAGCGTGTAACAAGAAGAAAAGTGCTAAAGTCTACACCAGAAGCATATCACACAGATCGATGGAGTGTTACAGGAAAGCAGTTTGAGCCCCTGTACAGTGATAGTTTATCAGAAAGGTGCAGCGAGTACTCCCTTGAAAACATTGTGGGAAGACCAGACCCTGGATCAGCTTCTTCCAGTTTCAAGACACCTTACAAGAAGTCACCATTTGTACCAATGGCTCAGAAACCCACTGACACTTCAGAAGTGAAAAAGACTAAAGCGCCCGTGTTTTGTCCAAAATCGGCTATCAAACATGTCCAGACTAACAGCAGAGTAGTGGGTTCAAGCCCCGTGTCATTGGGAAAAACCACACCTGTAACAGACACTTCAACCACACTTACAGAAAAACGGCCCAGCAGAGAACTGTACTCTCTTGTGGAAGCAAGGAAGAAGCAAGAGGAGATCATTATGTCAAAGAAGAAGCAGAAAGTGCGGCCATCTTGTGGAAGAATGACTGTAATGAAGTCGAGCTGTTCCAGATACAAGTACTCGGATCTTACACTGCAGACTGGCCTCTCGGTGCAAGAGCTGCTTAATATGGGCATCCTTTCTTCTACCATTAATATCTCCAGCAAGACTGCACAAGACTACAGATTCAACGTGAGACAGTTCTACCCAAACCTTGAGTCACACATTCTTGTTGGAGATGGTGCTTTCCTTGTAGCTGATGATGATGGATTTGCAGGAACCGAAGAGTTCTACAAAGCTTTCTTGACGATCGAAGGAGTGGACTCGTCCTTTGTGACAGATATCTGGGTTACTAATCACTATAAATGGATTGTGTGGAAGCTGGCAGCATATGAGGTGGCTTTTCCCCAGCAGTTTGGAGGAAGATCCATCAGCCCTGACTCGGTGATGCTGCAGCTCAAGTACAGATATGACACAGAAATAGATAACTGTCACAGGTCTTGTTTAAAAAAAATAATCGAAAAGGATGATACAGCTTGTAAGAGATTGATTCTCTGTGTGTGTGGAATTGTCACCATAACTATAGAATCAAATGGAACAAAAGAAGATGACCATTCTCAAGAGGTTTTTCTTGAGCTGACAGATGGCTGGTATTCTGTCAAGGGAAAGTTGGATGGGGCACTGTTAGAAATGGTGGAAAGAAAACAAATTGTGGTGGGACAAAAACTGTGTATTAGTGGAGCAGAACTTGGAGGTAGTGAGGAGGCCTGCTCACCCCTTGAGGCACCTTCATCCCTGTTCTTAAAGCTGTCGATGAATTCGACTCGCCCAGCGTCATGGGATAGTCGGCTGGGATACCAGCGAGATCCACGCCCCCTGTGTGTGGCAGCCTGCTCCCTTCATCCCAGTGGAGGTATAGCTGGCTGCATTGACTCCGTTGTGCTCAGAATCTATCCAGTCATGTATATGGAAAAGGTGGAGAACAGCACTCCCATCTTCCGAACAGCTGAGGCTGAAGAACGGATTCAGCGCCAGTTTGATCAGAGCAAAGAGGAAAAGATGGAAAAATTGTATGAAAAGATTCAGGCTCAGTTTGAACGGGAAGAAACTCAAGAACACAGAAGAGGTAGAAAAAAACTAGGAAAACGGGATCTAGAAGGCCTTCAGTCTGGGTGTGAGATATGGGAAGCAATGGAATCATCACTACACCCAGAAGAACTGCATAGTTGGTTGAGTGTGGAGCAGCAGCAACTGATGGAGGAATTCCAACGCACTCGTCATGAGCAGAGACAGCAACAGCTGCAGGCCGATTTCCACAAGGCTTGGGAAGAGGCACATGGAGATGAGACCACTAGAAAGGTTACACCTGTTCAGAAGATTCGTATTGCTGGGTGTGCCAGAAGAGACATTGATTCTAAAATAAAGCTGAAATCTACCAGCATGGCCCTAGAATTATCCTATCCTGTAATTTATAGGACACATGGCAGTTAA

Transcript

ctg302-5.14-1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00634	BRCA2	BRCA2 repeat	Family	Interproscan
PF09103	BRCA-2_OB1	BRCA2, oligonucleotide/oligosaccharide-binding, domain 1	Domain	Interproscan
PF09121	Tower	Tower	Domain	Interproscan
PF09169	BRCA-2_helical	BRCA2, helical	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002093	Repeat	BRCA2 repeat	Interproscan
IPR012340	Homologous_superfamily	Nucleic acid-binding, OB-fold	Interproscan
IPR015187	Domain	BRCA2, OB1	Interproscan
IPR015205	Domain	Tower domain	Interproscan
IPR015252	Domain	Breast cancer type 2 susceptibility protein, helical domain	Interproscan
IPR015525	Family	Breast cancer type 2 susceptibility protein	Interproscan
IPR036315	Homologous_superfamily	BRCA2 helical domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11289	BREAST CANCER TYPE 2 SUSCEPTIBILITY PROTEIN BRCA2	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000724	Biological Process	double-strand break repair via homologous recombination	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006281	Biological Process	DNA repair	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for ctg302-5.14-1 global RNA-seq network