Gene detail

Detailed information of ctg29-5.14-1 in Gigantopelta aegis Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
ctg29-5.14-1	CDC73 DOMAIN PROTEIN	chr10	72955685	72969962	+

Gene Structure

More details in Jbrowse Sequence

CDS

ctg29-5.14-1

GAGGGAAAAATATCGACACTTCCGGTATCGAATAAAATGGCTGATGTACTGAGTATTTTGCGTCAGTATAATGTCAACAAAAAGGAGATAATCGAAAAAGATGACCAGATTATATTCGGTGAATTTGCATGGCCAAAAGATGTCAAAACAAACTATGTTGTGTGGGGAACGGGAAAGGATGGAATAGTCAAAGAGTACTACACACTTGACTCAATTCTCTTTCTGCTTAAAAATGTTCACCTACAGCATCCCATGTATGTCAGAGAGGCAGTGGCTGCATCTGTGCATGTTGTCCGCCGCCCTGACAGAAAAGACCTGCTTTCCTACCTTAATGGAGAAACAACAACATCGTCATCTATTGACAAAAGCGCTCCTCTTGAAATTTCACAAAGACCTATTCAAGTGAAGCGTTCGGCTGAAGATGGGGGTCCAGATACTGAGAAAAAGAAACCAAGACTGGAGGAGGAGCAAGTGCAACAAGCCAAAAAAGATTGGATTTCTAAAATTGACAGTCGTCGTGACAACTCGGTCATGCCAAGCCAGTTAGGTACATCCTCCCTACACGAAGCAATGCCATTGGAGAAAATTGCGGCCATCAAGGCGAAACGTCTGGCGATCAAGCGAACGAAGATCACGTCTCTGGATGATGACATACAACCGGGGCAGCTGGAGCAGAGGAGCTTCGTGGACGCCGAGGTAGATGTGACGCGAGACATCGTCAGCAGGGAAAGACTGTGGAGAACACGCACAACCATCCTACAGAGTGTCGGCAAGCAATTTGCCAAAAACATTTTCAGCATTTTGCAGTCGATCAAAGCTAGAGAGGAGGGCACCAGCAGACACCATAATGCGCCGTCAAATACTCCATCAGTCATCGCACCAAAACCACAACCAACTGTTGGATACAACAGATATGATCAAGAGAGGTTCAGAAGGAATGAAGAAACCGAGGGCTTCAAGATCGACACTATGGGCACGTATCACGGAATGACCCTCAAGTCAGTAACCGAGGGTGCATCAGCTCGCAAAACACACACTCCACAGCCTCAACCAGTGCAGCCAATATCACGGCCAATTGTACAAGCAAGACCTCCACCAAATCAGAAAAAAGGTTCAAGGACCCCAATTGTGATCATCCCAGCGGCAGCTACGTCTCTCATCACCATGTTCAACGCTAAAGATGTGCTTCAGGATCTCAAATTTGTGAGTACCGAAGAGAAAAAATCTCAAGGTGTTAAGCGAGATAATGAAGTTCTGATACAGAGACGGAAAGATGGCGGTCTGACTGTGCCATACAGAATTATCGATAACCCTGTCAAACTGCAGCAAGATGATTGGGAACGTGTGGTAGCAGTGTTTGTACAGGGACCAGCGTGGCAGTTTAAGGGATGGCCATGGAACGGAAACCCTGTGGAAATATTTTCAAAAATTAAAGCATTCCATCTCAAGTGGTCGGAGCTGCCCCTCGACAACAATGTTAAGAAGTGGGCGGTACACGTCATCGCTCTGGACCGACACAAGCGCCACTTAGATCGGGCCAACCTGCAGCAGTTCTGGGAACATCTCGACAGGTATCTGTTGAAATACAAGCCACACTTGAGGTTCTAGTCAGGATGAAGTAGAGTTTGTACTCTAATGCAGCACACCTCTCACAGACGATATCTGAACCATGTTGTACCCCATCTGATAGTCTGACCCCCCCAACACCCATCAGACATTGTGCATCATCAGAACACTTATGTGGATAAAATATCTCTTGTATTTGTAGATATAATATTACAAGTTTTGTCTTCGTTACTCTATTTATGTGAGTTATGATATTTGACAGGAATGTTCTTCTTTATTCTCAACGTGTAAAACACAGTTGACTGGAAAGATTCTAGTGGAATGTGTTTTCTATTTTAAAGTTTATTTCAAACTGGTTCGTCATAGACCTGTCTGGTCAGGAGAATTGTATTTATTACAGTACTAGTAGGCAGTTCAGTGGTATATAGTTTATTATAGGTGAGATGCAAACACACACACACACCCCCCCCCCCCCCCCCCCCCCCAAATTAAAAAAAAAAAATCTCACCACCTATTGTTCAAAGAACACTTCATTTCCCCTTCAAGACAACTTTTGAAACCTTAAAAAATCATCTGCAAATAAACTTTAAAAAAAATACATGTCCACAGGAAAAGTAAGAAATATAAATAGTATTAGCATTGTATTGAAAAACAACCTAAGACGCATATATATATATGATGGAACAATGAATCCATAATACATTTGGGTTAATAAATTGTACTACTAATCTTAGGTTATGTTTATGTTTGAGCCGACATATTTCAAAATCACTTCCTTGAGACTAGGAAAAGTTTAGAAAATTGTATATCTTTATTAAAAATCAGATTCTTTTGGTGGTGACTAGCAACTGTTAGGCCTGTCTGGCACTTTACAGTTTTAGGCAGAATCCTGAAAACGTTTCTGGCGTATGATTATTAAGAGTCTAGACTCTTATCTGATAACTGCATCTTAAGACGTCATGGCAACATATACAAATTGCATGCATGTGAAGTCATTAAAGATTTGAGTGTAGACTCTACAAACACAGGCCCAGGCATGGTGCTTATAAAACTTTTAGTCTGAACTCGAGACTAAGAAGAGTAGGAGACTATCATTACGGCAACGCCATACAAATTGCTTGCATTTGATGTCATTTGAGATTGAGTCTGGACTCTTAAAAGTTTTATAAGTACGGGTCCAGATGCATGTTGAGAAGGGCAAGCGATTGTGGTTGCTAGCTAGAGTGGTTTTTGTTTTACACATTAGATAAATGTGATGTTATGGAAGACGATGGTCTCCTGAAATTACTATTGATAGACCACCATAATTAACTACATTTGTTTGTTTTAATCTAACATATTAAGTTTTTTTGTCATAAATAATATTTTGTTCCATACGTAACTTGCTAATAAAAGGAAAACAATGGTTTTTAAAGACAAAATTAATCACAGACTTTAATATACTTTTTTTTAATAGTTGATAGCTATTATATGTAATTTATTGTTAGTTTTTCCTAACTTAACACCAATGTGATTTGAAGTGTTAATTGTGGAGTTCAACAGAAACTAAGTTATGTCCATAATTATTTTAGTATTTTGTATTATTTGATAAAATCTTGATTTGTTATCAAAAGTGGGTGCAAAATGACCATGTGACATGACTAATTGTGATAGAAAAATATTCATAAAACATCCTGGAAACCAAATACTTGGAGACTTGATACAAAACTGTAATATGTGCGACAGTGTTGATGAATAAAGTGCTCCATTTACCATTCACATTTTCACAAGGACATGCCACTTCATTACAAATACAGACTTCAAAACAAAATTGTAAATATGTATAAAAGTATGGTATGTTGTACATGTAGTTTTGTTTGTTTTTTTCATTTTTCTCATCAGCTGCATGTTAAAATGTACAAATTTGATAACAAATTAGACATTTTAGTTCTTCATTTTTGTTTATTTCATGTATGTTTGACATAGTGTATGAAAGCAGTGTAAGTATCATGTTGTGCTGAAGATGAATGTCATCGACTCCAGTGTAACACAATTATACCCAATGTAAATAAAATTAATTACCAAAAACCAACACCTTGTGTTATATCTTATACTCTGTTACAAAAAGCGTTCCTGTCTGGTTTGCCTTGTTTAAAAATCATCACTAGTTAAGATTGTGACATCACATTTAATTCAGACGTCATGGTTAGTTTGTTTTTGTTTAATGTCACAACTAGAGCACATTGATTTATTAATCATTGTCTTTTGGCTGTCAAACATTTGATAATTCTGACA

Transcript

ctg29-5.14-1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05179	CDC73_C	RNA pol II accessory factor, Cdc73 family, C-terminal	Domain	Interproscan
PF16050	CDC73_N	Paf1 complex subunit CDC73 N-terminal	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007852	Family	Cdc73/Parafibromin	Interproscan
IPR031336	Domain	Cell division control protein 73, C-terminal	Interproscan
IPR032041	Domain	Paf1 complex subunit Cdc73, N-terminal domain	Interproscan
IPR038103	Homologous_superfamily	Cell division control protein 73, C-terminal domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12466	CDC73 DOMAIN PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000993	Molecular Function	RNA polymerase II complex binding	Interproscan
GO:0006368	Biological Process	transcription elongation by RNA polymerase II	Interproscan
GO:0016593	Cellular Component	Cdc73/Paf1 complex	Interproscan
GO:0032968	Biological Process	positive regulation of transcription elongation by RNA polymerase II	Interproscan
GO:0034402	Biological Process	obsolete recruitment of 3'-end processing factors to RNA polymerase II holoenzyme complex	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for ctg29-5.14-1 global RNA-seq network