Gene detail

Detailed information of ctg2801-0.2-1 in Gigantopelta aegis Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
ctg2801-0.2-1	TUMOR SUSCEPTIBILITY GENE 101 PROTEIN-RELATED	chr4	53258938	53279401	+

Gene Structure

More details in Jbrowse Sequence

CDS

ctg2801-0.2-1

TTGACTACTGCCACCTCCACAGCCGCAGCAATACCAGGTTTGCGCAGGATATCCGACCAGACCATACGGAACCGCCTACGTGAGGTAGGAATTCGTGCCAGACGTCCAGTTCGAGGTGTCATCTTAACACCACAACACCGTCGACTCCGACTGCAGTGGTGCCAGATTCATCGACAATGGCCTCAACTGCGATGGAGACAGGTGTGGTTCAGTGACGAGTCCCGATTTCTGCTCCGACGTCATGATGGAAGATGTCGCGTGTATAGGCGTCGTGGTGAACGTTATGCGGCAAACTGCGTGCAGGAAGTGGACAGATTCGGCGGGGGTAGTGTCATGGTGTGGGCAGCCATCTCACACACTGGCAGAACTGACCTGATCCACGTGCAGGGCAACCTGAATGCACAGGGCTACATTGACCAGATCCTCCGGCCACACATCGTTCCAGTTATGGCCAACGCCAACGCAGTGTTCCAACATTACAACGCCAGGCCTCACACAGTACATCTCACAACGGCTTTCCTACAGAACAACAACATTAATGTCCTTCCTTGGCCATCGATATCACCGGATTTGAACCCAATTGAGCATCTATGGGACGAGTTGGACCGACGCCTCCGACAGCGACAACCACAGCCTCAGACCCTGCCCGAGCTGGCAGCAGCCTTGCAGGCCGAGTGGGCCACCATCCCCCGGGACGTCATCCGTACTCTGTATAAAAATGTTGACGCCACCAAACGAGAAGTTTTAAATGTCTTATCACAGTATGCAGATCTCAGGCCACAGAGTAGCCGATTCGTTTTTAACGATGGAACAAAGAAACAGCTCTTGAATTTAGAAGGAACTATTCCAGTCCCATACAAAGGTAACAACTACAACATTCCAGTATGTATCTGGATTCTAGACACACACCCATACAACCCGCCAATGGTGTATGTCCGACCGACGCCTGTTATGCAGATAAAGCCAAACCAATATGTTGACGCCAATGGAAAAGTGGATTTCCCTTACCTCAGTTATTGGAAGCATGGTTCATCAGATTTATTCACCATGATCCAGATGCTGACTGTGAATTTCAGCGAGGAGTGTCCTGTGTTCTCACAAGCTAGTGCTATGGCCCTGCTAGAGAAGAATATTGAATTGGAGAGCGCACGTGAAAAAAGGTTAGCGGCTGAGGCAGAGGAAAGAAAAGCAAGATTTCAGTTAGAAGCTGAAGAAAGACGTTTCGAAATGGAAGAGCGCAAGAGACGACTTGACATTGAATTAGAAGAAAGGAAAGCAATGCTACATCTTCAAATTGCAAAGAAGTAAATGCAACCTAAAAACTGTTTGATGACAATTGTCAACTTAAAGGGAGACTAAACTCCTATATGAGCCTTATATGATGGAAAGATCCATACCCAGACAACACATACTGACACTTTAAGAAATGAAAAACATGTAATTTTAGAGTGCTAACTGGGGGCAGCCATTTTGTTTCGTTTTCATTTCGTCCGGTACTATAGCTTGGGGCGAAGTGACGTCAGCTCCGACTAACTCCTGTATGCACAGTGTAAACAAAAGCAGTAATTTATGACAAGGCGCTTCACATTAATCAACCAGACTTGTAAAACAACATAAATGACTTGATAGTATAATAAACTACTTAACTAAATATATTTCAATTTGCTGTAACAGAATGAAATGGAGTTATATAGTATTTTTCTCTCTTAAAAAATCCAAAGAAAAAATGCATATTATTAGACCTGTTGGTAGAGTAAGTTGGAGCAAAAATGACCACTCACAATACCCAAGTGATAATTTTCTTTTCTTTGGGACTACGTAATTGGTTAGTTTTGCTATTTTAGATGGGAAAGTTTACTTAATCAAGGGTTTTATAGAATTATTTACAGTAATAAAGCAGGACGACTGATATAATGTCCATTAACATTGTACGGGCGGCAGGTTATCCTACAATACCCGGAAATCTTAAAAAGACTGGCAAGTATTTTTGTATGTGTGTCTAGACAGTGGTATTCACTTACCTTGACTGGATACCTTGCAATATACAACTGCCAATCAGGAATCAAATGTGCATGCCACAGAAAGAAAGGACCAATTAACTAAGAAAACACTCCAATTATCATGTCAGTATGTGGGTTAATGTACTGACGAAACATAATACAGTTATTTCGACACTTTGACAGTGGTGGTTTATTTTGTATTGAACAATAATATATACTTATTGCTGGCTTACTGGGATGGATATTATTACAGAACTTTGTGATGCATCTGCAAAAATCAGTTCCGTTTTGTGTCTTCAGTTCTAAGACTAATTCATGATGTGACACGTTAAGTATTACATAACCACCAGCTCGCCAGAGGGTGTATTCACTGGGATGGTACAAAATGGCTGCGCCCGTAATATATAATAGCCGTCACATTTAACTGTTTTATTAATTAACTATACGATTATACTTGTTGATGTTAAGCAGTAATGTGCATTATATATTGTTGAATATGTATACCAGTCCAAAAGCCTTCCTTTAACATTCCTTTAAATTAAAAGTTGTGTGTGTATCTTTAAATATCCATGTGTGCTTGTGAGCATCTTACTGAAGATGGTGAGCATTTTTACCCTATTGTCCTACATCATAACATGTAGTCTATGTATAGCATGTGACCATAATTTCGTAAGTGACATTGTTTAAACTAAATATCCAACTGTTTTTATATTTTGTTTTAAAAGAATAAATTAATATATTTTCAGATCCCCTAGACTTGAAGTTTATCCTTTAATTTTATCAATTCAGAAACAGATTTGGTTATCAATTTCATTGCACTAAGGCCATTTATCATCCATTAAAGGCTTTTGTTGGAAATATCGCTGGCACTATAATCTGCGATATATCCTGCAATATTCTCCTAGGAGATATTACTTCTTATCTTGATTGGTCAAATTTTAATCACAACTTTATTTTGTTACGTCACTGTGTATGTTTCAGCGCTAAACCTATCATTAGTGACGTTACGCCACTGTCGTTCTGCTAGTTATGGCTCACTACACAGGGTGAGAGTTGATTGATGACGGTCCACTATAGTTCCTAATTGTGACACAAGTTGGTTCACACATTCACTTCTAGGAAATGGTGAAGAATTAAAACAATATGTATGTGTAATGGTAAGCTTTCTGGTTGTATTTTGCCCATGCTATTTTGTAATATTGTTCATTGACCTTTTGAGACATGAGTGTATAGCGTAAGAAACAGCCGGAGTGAATCGGTTAATGAACCACCTGTTCGGATCGGTATTACAGCCAGATGCGGTCATATAGCAAAAAACTGAGATGGAAATGTTCTCAATTTTAGAGTGAAAATAAATGCTTATATAATGTATGTTCGCAATGGTGTATGTTAGTGCCAAAGAGAACCCGTTCTATTGGCAGTCTTCGTTTGAAGTTGGGCAATTTAACATGGGTTTAAATGGCAGATGACATCTGTGTAGTGAGACCTTAACGAGTTTACCGCTGCCAAATATAGTGTTATTCAACCCACATTACTGACAATGTTTACAATTGTCGCAAATGAAAAGAATGATAATGGATGATAAAAAGAATTTCCCCCTCG

Transcript

ctg2801-0.2-1

Protein

Gene family

Gene family	Subfamily
Ubiquitin Family	UBD\|UBC-like\|UEV
Ubiquitin Family	E2\|UEV\|UEV

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01498	HTH_Tnp_Tc3_2	Transposase	Family	Interproscan
PF05743	UEV	UEV domain	Domain	Interproscan
PF13358	DDE_3	DDE superfamily endonuclease	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002492	Domain	Transposase, Tc1-like	Interproscan
IPR008883	Domain	Ubiquitin E2 variant, N-terminal	Interproscan
IPR016135	Homologous_superfamily	Ubiquitin-conjugating enzyme/RWD-like	Interproscan
IPR036397	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR038717	Domain	Tc1-like transposase, DDE domain	Interproscan
IPR052070	Family	ESCRT-I complex UEV domain-containing protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23306	TUMOR SUSCEPTIBILITY GENE 101 PROTEIN-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000813	Cellular Component	ESCRT I complex	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0006313	Biological Process	DNA transposition	Interproscan
GO:0008333	Biological Process	endosome to lysosome transport	Interproscan
GO:0015031	Biological Process	protein transport	Interproscan
GO:0015074	Biological Process	DNA integration	Interproscan
GO:0036211	Biological Process	protein modification process	Interproscan
GO:0043130	Molecular Function	ubiquitin binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for ctg2801-0.2-1 global RNA-seq network