Detailed information of ctg2757-0.4-1 in Gigantopelta aegis Gene info
Gene IDAnnotationChromosomeStartEndStrand
ctg2757-0.4-1PRE-MRNA SPLICING FACTOR PRP8ctg2757_pilon_pilon178612889-

Gene Structure
More details in Jbrowse Sequence
CDS
Transcript
Protein

Gene family
Gene familySubfamily
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Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF08082PRO8NTPRO8NT (NUC069), PrP8 N-terminal domainDomainInterproscan
PF10596U6-snRNA_bdgU6-snRNA interacting domain of PrP8DomainInterproscan
PF10597U5_2-snRNA_bdgU5-snRNA binding site 2 of PrP8DomainInterproscan

InterPro
InterPro termTypeDescriptionSource
IPR012591DomainPRO8NT domainInterproscan
IPR019580DomainPre-mRNA-processing-splicing factor 8, U6-snRNA-bindingInterproscan
IPR019581DomainPre-mRNA-processing-splicing factor 8, U5-snRNA-bindingInterproscan
IPR027652FamilyPre-mRNA-processing-splicing factor 8Interproscan
IPR042516Homologous_superfamilyPre-mRNA-processing-splicing factor 8, U5-snRNA-binding domain superfamilyInterproscan

PANTHER
PANTHER termDescriptionSource
PTHR11140PRE-MRNA SPLICING FACTOR PRP8Interproscan

Gene Ontology
GO termsCategoryDescriptionSource
GO:0000244Biological Processspliceosomal tri-snRNP complex assemblyInterproscan
GO:0000398Biological ProcessmRNA splicing, via spliceosomeInterproscan
GO:0005681Cellular Componentspliceosomal complexInterproscan
GO:0005682Cellular ComponentU5 snRNPInterproscan
GO:0017070Molecular FunctionU6 snRNA bindingInterproscan
GO:0030619Molecular FunctionU1 snRNA bindingInterproscan
GO:0030620Molecular FunctionU2 snRNA bindingInterproscan
GO:0030623Molecular FunctionU5 snRNA bindingInterproscan
GO:0071013Cellular Componentcatalytic step 2 spliceosomeInterproscan
GO:0097157Molecular Functionpre-mRNA intronic bindingInterproscan

KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
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Expression pattern
 1. Expression trend for ctg2757-0.4-1 global RNA-seq network
TOP