Gene detail

Detailed information of ctg243-7.2-1 in Gigantopelta aegis Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
ctg243-7.2-1	REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN	chr6	69654639	69670780	+

Gene Structure

More details in Jbrowse Sequence

CDS

ctg243-7.2-1

ATGCCGCCGTTACCGTCCGCGGATCGGCGCGTTTTAGTGGAGAGTATGATTGCCGAGTTTCTCGACAAAGGGGCCATCCAGAGAGTCAGTCTGGACACTCCGGGATTTTATTCTCATCTTTTCTTCGCCCGGAAGAAAAATGGGGAATGGAGACCAATCCTAAATTTGAAGCCACTGAACGTATACGTCGATGTTCCTTCCATGAAAATGGAAACGGTTCATTCGGTCCGGAACCTGCTTCAAATTGGGGAGTGGGCTGTGTCGATCGATCTGAAAGACGCATACCTCCATGTCCCGGTGCACAAGGCGTTTTGGAAGTTTCTGCGCTTCCTGTTCGACGGGAAAGCGTACGAGTTTCGGGTGCTTCCGTTCGGTTTGGCGACGAGTCCCCATGCTTTTACACGTGTGGTAAAAGCGGTGGTAGGTCATGTTCATTTGTTAGGGGTTCGAATGCATACCTATCTGGACGATTGGTTGATCCCAGCTTCGTCGCAACAGGAGTGTCAGACCAATGTCGGGTTGGTTTTGGACACGATCCTCCAATTGGGTTTTATTCCCAATTGGGTGAAATCGGAGTTAATGCCGGCTCAGATTTTCACATATCTCGGAGTGGTCTTCGATCTTGTGGTAGCGTCGGTTCGTCCCACCGATGTGCGTATCCACAATTTCCAAACGTCGGCGCGACGTTTGATGGGGGAGCAAAGTACTACGGTACGATCTCTCCACGTGGTGTTGGGCCACCTCGAATCTCTGGCCTCATTGATCGTGCGGTTCAGACGATTCAAACGACCACTCCAGTGGCATTTGTCCCCACGGTGGGACGGTCACAATTGGGACACGATAGTGCCTCTGGGCCCATGGTTCACTCATCCGATACAGGAGTGCCTGTCGGACAAGTGCATGTCCCTATCGGTTCCGTTGCACCCCCCTGCTCCGGATCTGATCCTGTTCACGGATGCGTCGCTGCACGGGTACGGGGCGCATCTGTTGGATCAACACATTTCAGGGGTATGGAATCTCTCCGAGAGGAAGCTTCATATCAACTGTTTGGAGATGGAGGCAGTGCATCGTGCCTGTCTTCATTTCCGGTGTGTTCTTCGACACCGTCGAATTCTGTTGAGATGCGACAATACGTCGGTAGTGGCATATCTCAATCGTTGGGGTGGAACCAAATCGGAGACTTTGGGTCGCAAAGCTCTTGCGATTTTGGAATTCTGCGACCAACTAGGGACCACTCTGTGGGCGAAACACATTCCTTCATCGGTGAATGTGTTAGCAGATGCCCTCAGTCGACATACCCCTGTTCAGACGGAGTGGATGTTGAACAAAGGGGTGGTCGCAGCGGTTCTTCGGGTGTGGGGCAGTCCACAGGTGGACATGTTTGCCACACAGTTGAACAACCAATTGCCGGTGTTCGTGTCCCCGGTACCGGACACATTGGCGTTGGAGTACGACGCGTTAAGTATGGATTGGACGGGACTGGATTTTTATGCCTTCCCTCCTCCTGTCTTACTCGGCAAGGTGTTGACCAAAGTGGTCCAGGAACCTTGTCACGTGACGTTGATAGCTCCTCTGTGGGTGGCGCAGCCCTGGTTTCCACAGCTCCTGTCACTGTTAGTGGCAGTCCCATTCCGATTACCAGTGTTGTCCGATCTACTCAGCCAGCGACTGAGTCAGACGGTGTGGCATCCGAAGCCGGAGGTCTTCCGGTTTCACGCGTGGAGGTTATCAGGGCTTCCTTGCGACGCAGAGGTTTTTCGACAAGAATTGCGCATCTCGTCTCTTCAGTCGGTTTATCAGTGTCACTGGCGTATGTGGGTTCGTTGGGCGAACGCACGGGATTTCGATCCCTTATCGCCTACTGTCAACGATTTAGCGGAGTACTTTCTGGCGTTGGTCCAAGAAAGGAAACTTAAAGTCATGACAGTGAAAAGTCACAGAGCTGCGATTTTCACTACTCTTAAACAGTGTGGATGTCGTGACTTTTCTACCAACTTGGTGTTGCATGATTTACTTAAATCATTACAATCCACGGTTGAACGACCTTCCATTATTCCGAAATGGAATGTCTTTCTGGTGTTGCATGCTCTTAAGGGTGCGCCTTATGAGCCGTTGAGGTTTGCTAGTCTTCGTGCCTTGACATGGAAGACTCTGTTTCTGGTTTCACTGGCAGCTTGTCGTCGGATCAGTGAGATACATGCTTTTTTGCATGATTTGGTTGATTACAATTCGGACGGGTCTGTCACTTTACGTACCGACCCTATCTTTGTTGCTAAAAACCAGTCTCCAGGGGAAGAGTTTCCACCTACTGTCATTCACAGTTTATCTCGTACACTGTCATCTGATAACTCGGATAGACTTCTTTGCCCGCCTGTCAATGACAAAGATGTTGCACGGATCGTGGAAATGGGATTTTCCCCTGACCAAGCGACTGAGGCACTGAAGCAGTGTAACGGAGACGTAGCTGCGGCCACACACACTCTGCTGAACTTCGATGACAGGGATAGAGGCTTCGACAGGAATAACCGAGCCGGGGGTCGATTTGAGAGAAATGACCGCATGGACAGAGGACAGGGCAACGGTTACGGCAACAGAGGGGAGCACGGTGACAGATACCAAAGAGGAGATCGTTCTGATAGGTTTGAAAGAGGGGACCGTCCTGATAGATTTGAGAGGGGAGATCGCCCAGATAGATTTGAGAGGGGAGATCGCCCAGATAGATTTGAAAGAGGAGATCGTCCAGATAGGTTTGAAAGAGGAGATCGTCCAGATAGATTTGAAAGAGGAGATCGTCCAGATAGATTTGAAAGAGGAGATCGTGGCGACCGATTTGAAAGAAATGACCGGGGCGACAGATTTGATAAAGGGGACCGTCCAGACAGACGAGATCAGAGGACAGGTGGTAGGGGGCGGCGTGGCCGTGATGATGAAACTGAAGATGGTGCTTCTAGTCGGCCCAGTGGACCTGCTACTTTGTTTGACTTTCTCACCACTAAAATACCAGTCAAAGAAGAGAACAAGACGAATGGAACTAGTGATATCTCCAACAGCAATCCCAATAAAGGATCTCACACAGAGAACAGAAATACACAGCAGAGTTATTCTTCCAATAGCTCATACTCCAGTAAATCATCAAGCTATGCCGAGGACGCTTCCAGTCATAATCCCCCGACCCGCAAACCAAACCTGCCACCTCGACTAGCAAACAAATTCAGCCAAGAGACCAATCCGAGGAAAGAGGACTTTAGCAATAAGCAATATTCAAATCAGCAGAGTAGAACTGGTTCCAGTCAGTCGCACTATAGTAATAATAGTAGCGAGTTGCAGGACAGAGTCCAGAATAGTTCTTCCAATAGGCCAGAGTCTGACAGTGTGAGAAAAACGACAGAAAGAAACCAAACCCGTCCAGCAGCACCAAATACTGCACAACACCGACAACAGAACTCATCGAGGCGTGACTTCCGGCAAGATGACCGGCCACAAGATACACGACAGGACAGCTATGGTGATAAGGATCGGCAGGCAAAAGTGAGGGACAGACCGAGCAACTTCAGAGACAGACAGATGGATGGACAGTCTGAAAACCCCAAGTGGGCAAATAGCTCAGGGAGGCAGAATCAGAATGACGGACAAGAATCTTGGCCTAGAAATGTGGGACAGATGTGGAAGGAAGGCGATACGTGTTTAGCCAAGTACTGGGAAGATAATCAGTTCTACACTTCCCGGATTGAGGCCATGGCACCACCACAGGTTGGCACCTGCGTGGTTACCTTCCTCGAGTATGGAAATGCGGAAGAAGTGCTCTTGAGTGATATTCGACCTATCAGTAAACCTAACTGGCAACCAAACGGACCTCAGGAGAATTATGGAAACTTTTACCATGCTCCAAGAAATCCACATCAACAGAACTTTTTTGTACCCCCACCGCAGATGCCTATATCAAACCCCCCTCCATATCCGGGAGAAGACGTGCTGAACAGTGGTGCAATAGGAACAATGGAGTTCCGCCGTGGAGGATCGGGAACCTACGACAGGAGTCGTGCTAACCCGAAGAGTCGACCGACACAAAAACTCTATCAACCCCCTGTGTACCAGCCTCGCCAGAACTCTTCATGAACCTGTCGGATAATCAGCCCCATGAATGCAACTCATTTGATTTCTTCTGTTAGTGTCTGAACTGAATGTTAACGTGTATCATATTGATACATGCATAGATAGAAATTTATTTAAATCAATTTGGTTCTAAAGAAGTAGGGACAATGTTTGTGAGGTGGGTAAATGATTTTGTGAAGGGTGGTGGTTGTGGTGGGGGTGGAATATTGGTACTAAATATGAGCAAGGGATAATAGTTACTAGGGTGCAGTTTGCCACCATACGGTGTGATCGGACTACTCCCAAAATATACCCCTAGTGTCCGTCCAGTCTCTTCATTAATTTAAAGATTGTTAATAATTGTTAAAAAATTGTATAATAATTTAAACATTGCTATCGACTGAGACCAAATAATATAATAATTTAAACAATATTGCTAGTATACAAAGCCAAATATATATATATATATCTCTTGGAGGTGAATTTTTTTCTGTAATCTATTTCCCCTTGTTATTTTTTGTTTTTTTGTGTCTATTGTATTTTGCGTACAAGTAAGTTTGAGCTACAGAAAATGCCAGAAAAATCAGAAACATTGGATTTGCCAAAGTTTAAGTACAATGTTGTAACATGTTTTTTAAGCTGACAAAAAGTCAACTTTTACAAAAGCAGTGGGGATTTGGGGAAATATTTTTTGAGTATTTTGTAAGCTTAAAAAGGAAAAATAAGAGTTTTTTGCAATTTTGTTATTTTTCTTATACATGTGGTAACAAGATAAAAAAATTTTTTATAATTTAGGGTTTAATGTACATAGTATTTAAAAAGACAGTTGATGCATTTAATATTACTGTTAGTTTCAAAACCATTCTGGTTAGTGTCACTTGTACCACTGCAGTTTTGTTCAATACACAAAGACGCAAATTTAACATGATCCTACCGGTGAGCAGACTAATCGCACATAATATAGTTACTTTCTTTTGATGTTTTTTTGTTTCTTTCCTCCCTCCTTCTCTCCCCCC

Transcript

ctg243-7.2-1

Protein

Gene family

Gene family	Subfamily
Ubiquitin Family	UBD\|Alpha-Helix\|UBA

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00078	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF00627	UBA	UBA/TS-N domain	Domain	Interproscan
PF06003	SMN_Tudor	Survival motor neuron protein (SMN), Tudor domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000477	Domain	Reverse transcriptase domain	Interproscan
IPR002999	Domain	Tudor domain	Interproscan
IPR009060	Homologous_superfamily	UBA-like superfamily	Interproscan
IPR010304	Domain	Survival motor neuron, Tudor domain	Interproscan
IPR010998	Homologous_superfamily	Integrase/recombinase, N-terminal	Interproscan
IPR015940	Domain	Ubiquitin-associated domain	Interproscan
IPR036397	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR043128	Homologous_superfamily	Reverse transcriptase/Diguanylate cyclase domain	Interproscan
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR052055	Family	Hepadnavirus polymerase/reverse transcriptase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR33050	REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0006397	Biological Process	mRNA processing	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for ctg243-7.2-1 global RNA-seq network