Gene detail

Detailed information of ctg240-8.17-1 in Gigantopelta aegis Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
ctg240-8.17-1	ABC TRANSPORTER G FAMILY MEMBER 28	chr4	61919198	61951767	-

Gene Structure

More details in Jbrowse Sequence

CDS

ctg240-8.17-1

ATGCTAAACCTGAGACTTCATACTGACGTGCACATTTCAGGTTCTGGTAAGACGTCCCTGCTGGACGTGCTGTCATTCCGGACCGAGGGTAAGGTGAGCGGGGACCTGGTGTTCAAGCGACGGGTCTGTACAAAGGCGATGATGAAGCTGGCCTCCAGTTACGTGATGCAGGCTGACCGCCTCCTGCCCAACCTGACTGTCCGGGAGACGCTGCGGTACACCGCCTACCTCAAACTGCCCAATCACTACAGCAAATCTCAGGTGGAAGGCAAGGTACAACGTGTGATAAACGAAATGGGTCTCCACCATGTCGCAGAAAGCAGAATAGGCGGCGCTGTGATTCGTGGTATTTCAGGGGGAGAGAAGCGGCGAGTGACCATAGCTATTCAATTACTACAAGATCCTGAGATTCTTCTACTGGATGAACCCACGTCCGGTTTGGATAGCTTCACTGCAAGATATCTGGTCTCGAACCTCGCTGACCTAGCCCACAGGGGCAGAATTGTTATTTTGACAATACACCAGCCTCGTTCGGACATTTTCAAGCTGTTTGATCAAGTGGCTATTTTATCGAGAGGGGACCTGGTGTATGCAGGGCCGGCCGATCAACTCGTGCCGTACTTCACAGGGATTGGCTACCCGTGTCCCATATACTCAAACCCCATGGACAGATACATTGATGTAGCTAGTGTGGATCGCAGGGATGCGAAGCGTGAAGAAGAGACTTCTAACAGAGTGTATGGGCTGGTTGAGTCGTACGCCAATTCTGATATACACCGCGAGATTCAGCAGAAGTGTTCTGACAGTATGGCGTCTGTTGTGAAATCCAGACGTAAACCACAGCCATCAAAGGGGCCGGGGTGGCCTCGAATAATGAACACAATTATCAGTCGGATGTTTGTAAACCTGTATCGTGATCGCAGCAACTTCATATCTCGCTTCCTGACGCTGCCGTTCTACGTCGTGTTCGTCGTCATCTTCCTGGGGAAGCTGGAACACAACCAAGAGAGCGTCCAGGATCGAACTGGTTTACTCTACCAGAGTGTGAGCGCGCCTCCGTACATCGCCATTGTCAATGCGGTGGCACTGTTTCCTCCTATCCGAGAAGTGTACTACAGAGAATGCCGGGACGGGTTGTACTCCGCGGCTTCGTTCATCTTGGCATACGCCATCCACTGCATGCCTTTCGTCATGGTGGCCAGCACCATCTTCGGATCAACCATATATTGGATATGTGGTATGTACCCAAGTGTTGACCGATTCGCCATGTATTTGGCTAACGTGTTCATCCTGAGTTACTCGGGGGAACTCATCATCATTGCCACGATGGGACTCTTCTTGAACCCTCAGTTAGCCAACAACATGATTTCTCTCTTCTTCACAGCAGCCATTCTCCTGTCAACGGGTTTCCTCAGGTCTGTGGAAAGCATGCCTCGGATTCTGCAGTGGCTGGGGTACTCCATGATATACAAGTACTCCAGTGAGATATTTGTCGCCAACGAGTACCACAATCTGACTCTGACGTGCGACAGAAACAGCACCAGTGTTAGTTTGTTGAAAGCAGCACTGTCGGAAATTGGCGTTTTAACAAGTTTCTTTGATGCCAGGAACAGCAGCACGGCGGATATTTCTGATTTTGTTTCCTTCAATCCACCCATCCCTGTCGTTCTTCTGAGCTCTAACAAGACATTTGTGAAGCAAATTATCTGGCAGGAATGCTTCAAGAAAAAGAGAACTCCTTTAGGACCTCAACAATACTGGCTTTTTGTGTGGCCAGAATCCACCACTATCACAGAGCTGTCGCCGATGTTCTTAGCATGTGTGACCCACGTGGCTGTCGTAATCCCCAGCGAACCCCGGGACGGATTACTGTCCATGGATCAGCCACGCACGAAAATGACCTTCGTGTACACTCTGCTACAAACACGTGCCTCTGGCAGACGTCTACGACTTGCTGCTACCATTAACGAGTGTGGAAACATGACGACGTTCAGAAACATCTTTCCCAACAAACACGGGTTTAACCAGGAACATTTCACAGCAGCCACCTTACAGGTGAAGCCTTTCTTGTACAAGGAAGGAAGTCAGTATGTTGGATTCCTGGCCGATATTCTCAACTTCATTTCATCTCCTCTTAACTTCACATACTCGTTTGTGGAAGCGCCGGATGGAAAGTACGGAAGTGTTGACAATGGTTCCTGGAACGGCTTGATTGGCATGTTGGAAACAGACATAATCATGGCCGATATTAGCACAACCTATCTCAGACAGAAAGTGGTGGACTTCACTCATCCCTACAACTTCGACGTGGCCACCGTCGTCATGCGGCGGCCCATCGACGACAGCAGTTCGTACCTGAGCTATATACAGCTGTACAGGTGGGAGGTGCACGTGTGCATCTGGAGCTCCATTGTTCTTGCCTACCTGTTTGTCAAAGTTATAGAGCGGGTGAATCCGTTTTATAGACACGGGAGAGTTGTGGACAAGGGAAATCACTCTACACTGTTCTGGCTTCTGTATGGGTCTCTCCTCAAGCAAGGAGGCCGCGATGTAACGAAGGTGTCTCAGTCCAGGAGAGTGTTTCTGGGAACCTGGTGGATCTTCGCCATCATCATGTCCAGCATCTACAGCGGCAACCTCATCGCCTTCCTCACCGTCAGCAGGCTGAAGCTGCCCTTTGACACAATATCTGGAATGGTACAGCAGGATCGCTTTACGTGGGGGACGTATGGTGGTTCAAACTATATTAAATTTTTTGAGGTGCGTAATAAGAGGTATGATAACCAGTAA

Transcript

ctg240-8.17-1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00005	ABC_tran	ABC transporter	Domain	Interproscan
PF00060	Lig_chan	Ligand-gated ion channel	Family	Interproscan
PF01061	ABC2_membrane	ABC-2 type transporter	Family	Interproscan
PF10613	Lig_chan-Glu_bd	Ligated ion channel L-glutamate- and glycine-binding site	Domain	Interproscan
PF19055	ABC2_membrane_7	ABC-2 type transporter	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001320	Domain	Ionotropic glutamate receptor, C-terminal	Interproscan
IPR003439	Domain	ABC transporter-like, ATP-binding domain	Interproscan
IPR013525	Domain	ABC-2 type transporter, transmembrane domain	Interproscan
IPR017871	Conserved_site	ABC transporter-like, conserved site	Interproscan
IPR019594	Domain	Ionotropic glutamate receptor, L-glutamate and glycine-binding domain	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR043926	Domain	ABC transporter family G domain	Interproscan
IPR050352	Family	ATP-binding cassette subfamily G transporters	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR48041	ABC TRANSPORTER G FAMILY MEMBER 28	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0005886	Cellular Component	plasma membrane	Interproscan
GO:0015276	Molecular Function	ligand-gated monoatomic ion channel activity	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0016324	Cellular Component	apical plasma membrane	Interproscan
GO:0016887	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0033344	Biological Process	cholesterol efflux	Interproscan
GO:0042626	Molecular Function	ATPase-coupled transmembrane transporter activity	Interproscan
GO:0042632	Biological Process	cholesterol homeostasis	Interproscan
GO:0043190	Cellular Component	ATP-binding cassette (ABC) transporter complex	Interproscan
GO:0055085	Biological Process	transmembrane transport	Interproscan
GO:0140359	Molecular Function	ABC-type transporter activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for ctg240-8.17-1 global RNA-seq network