Gene detail

Detailed information of ctg235-5.22-1 in Gigantopelta aegis Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
ctg235-5.22-1	26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 12/COP9 SIGNALOSOME COMPLEX SUBUNIT 4	chr8	56515283	56539615	-

Gene Structure

More details in Jbrowse Sequence

CDS

ctg235-5.22-1

TAACAGTCAATTGCAAATCGCAAACATGGTGGACGCAGCCGAAGGCCGTCTACAACGGATGGACGTGGATTATAGTTCCACTGTAGATGAAAAATTGCCTAAGTGTGAAAAACTCGCAAAGCAAGGGAAGCTTACAGAGGCATTAGACATTCTGTTGTCATTGGAAAAACAGACTCGTACAGCCTCAGACACACATTCCACTGGTCGTATTTTGGTATCAGTGGTTAAACTTTGTTTTGAGAGTAAAAACTGGGATGCCTTGAATGAAAACATTGTCTTACTTACCAAAAAACGTGGCCAAATCAAACAGGCTGTCACAAAAATGATCCAAGAAGCTTGTACTTACGTTGAAAAGACTCCATCACAGGATGTCAAGTTGAAGCTGATTGACACTCTCCGGACAGTTACCGCTGGAAAAATATATGTAGAAATAGAAAGAGCAAGACTAACCATGACCTTGGCAAAAATCAAGGAGGATGCTGGGAAGATTTCTGAAGCGGCCACCATCTTACAAGAGCTTCAAGTTGAAACCTTTGGATCTATGGAAAAGAAAGAGAAGGTCGAGTTTATTTTGGAGCAGATGAGACTGTGCCTGGCAAAGAAGGACTATATCAGGACTCAAATCATCAGCAAGAAAGTGAGCATTCGATACTTTGAAGACAAGGATACCACGGAACTGAAGTTAAAGTTTTACCAGCTGATGATAGAGCTGGATGAGCATGAGGGCTCGTATCTAGCCATCTGTAAACACTACCGAGCTATCTACGACACCACGCAGGTCAAAGAAAACAAGGACAAAATGAAAGAGATAGACACTCCACGGATTCCAAGGCTCACCGATCTTCGGCGGGGAAGTCCTCTTCGGCGCATCGGAGCCGGGACCGTAGCCACTCCACACGACCTGTACGGCTCCCTACGGGTTCCACAGATCGTCAGCGCCAACCTTCAGTTGATGTGGCTTCCAAGGCCTCCGAAGGCTCTGAAGTGTGTGGTCCTGTACATGATTTTAGCCCCGTATGATAACGAGCAGGCAGATCTCATACACCGAGTGAAGGAAGATGGCAACCTGGAGGAGATTCCCAAATACAGAGATCTTCTGAAACACTTTACAACCCATGAGTTAATAAACTGGAAACAGCTGTGTCAGTCGTTCGAGTCGGAACTGAAAACTGGTTCTTCCGCCAACCCCCCGACCCACGTGTTTAACTCCAAGTCAGAAGGGGGTGTCAAGAGGTGGCAGGATTTGAAGAACAGAGTTGTTGAACATAACATCCGAGTGATGGCTAAGTATTATACAAGAGTTCGAATGACTAAAATGGCCGAATTGCTAGACCAGCCAGAATCTGAAACTGAGGATTTTTTGTCAAACCTCGTAGTGAACAAGACAGTATCAGCGAAGATCGACCGTCTTGATGGAATAGTAAGCTTCACATCTCACAAAGACCCCAATGACATTCTCAACGAATGGTCGTACAAACTTAACGATCTGATGCAGTTGGTGAACAAGACGAACCACCTCATTAACAAGGAGGAGATGGTGCACCGCATTCATTGATGTCACTTCGGTTAACCCTGTAAACAGTTAACCCTTTATCAGCACCGGATATCACTCTGTTAACCCTTTCTCAACATCAGAACATCATTCTTGTAACTCATAAAGCAGTCATACTCATTTCAGTAAGAATGTCCCAGCGATTGCTGACTCATAGTTCAAATTTGTTGCTGAGTCTAGTGACTGTGAAACATTTAGACTCTTGAGATTCTGACATTAGAGATTTTTTAAAAATATTTCCAGGTCTTATTTCAGAATTCCAAATGTTAGAGTTACCCGAATTTTTTTCCACTAAGCTTCCCCAAAATGACCAGCAGTTGTTGACTCAAATTCAGGTTTCAGAGATGAAAATGCTGCTTATTTTTCTGGAATTTTAGATTTTTATGGTATTCTAGATATTTATAAAATTTCTGATTTTCATGGAATTACATATTTTTATACAGAATTCCAGATTAACTGAAATTATGGATTTTTATTAAATTCCAGATAGTTGGAATTCCATATTTTCACAAAATTTCAAATAAGCTGAAATTATGGATTTTTCAGAAGTCCAGATTTTAGTGTTTCCATGAAACTGTTACTAATCCTTGTTCTTTGATAAAAAAAATCTTTACAATAACCCTGTACTTCACAGTTTTCCAGTGTTTTGGGTTTTTTGCCAGTGTCATTTTTATCTCTTTGTCATGCAAAATGCATGTTAAATCTAGTACTTGTATCATTCTTGAAGACTTAACCGAGTGTCAAGTCTAGAACTGTAACCATATCATTGCATGTTTGAGTGTAAACTCTTGTGAGATGTATATTAATAAAAAAAAATATCTTGTAATGCAAACAATATTTTTTAAATGTTTGATACTATAAATTATTGAAAAAGAACCAGCTTACAGATTAAGCACTGACATCTTCAAACATTTTTACACACAAACTAGTATTGCTGTCATCGGCAACCAAGTCTTTTTACTGGAGATAAGTTAAAAAAATATCTTTAATATTCAAAAATTCTGATTAAGAGCTTGGGTTTTGGGGAGCTTGATAGTAATGCAGTTTTGGGGATTCAGTTTTCTGTTCATCTGTAATTTATACCATCTGCTTTTTCATCTCTTGCCCATTGGGCTATTTCTCATTCCAACCAGTGCATGAGGATTGGTACATTGAAGGCTATGGTATGTGCTATCCTGTCTGTGGGATGGTGCATATAAAAGATCCCTTGCTACCAATGGAAAAATATGGCAGGTTTCCTCTCTAAGACTGTGAAAATTACCAAATTATTAACGTCCAATAGCCGATGATTAATAAATCAATGTGCTCTAGTGTTATTGTTAAACAAAATAAACTTTAACTTTTTTTTATCTCTTATGGAATGATCTCTGTTTGTCATCTTATGGAAGGTTCTTTTCAACAGCTTGTTGAAAAAATGTTTTGACAAATGTATGAATTTGCAGAAGGGTCAAGTGTTATTTATGTTGATATTTTTCTTGTTCAAATTATATAAAGATGTTGTGTCATGATTTGTAGTAATAAAATGAGCATGACATTCTCTGCCTTGTCAACTTGTGTCGGTTTTGGTTATTTCTTGGGAAGCTTGGTCTAGCTTGGGTTATCTCCCATCATAAAATACTAATGTGGAAGTGCTTCCTGTGTCAAAAGCATAGGAGGCGTTAACTTCCCCCCTAGTGCTGAAGCAAAACCTCAATTTCAGGCAAAAATTATACACGTATTCGGGCAAAATGTGCAAACGTGAGACCTTTTTATGTACATGTATTTCCATCATTCTACCCTCAGTCCTGTCTGTGGGATGGTGCATATAAAAGATCCCTTGCTGCTAATCAAAGAGATTAGCCCATGAAGTGGGTTTCCTCTCTCAATATCTGTGTTGTCCGTAGCCATATTACCGTAAATAAAATGTGTTGAGTGCGTCGTCAAATAAAACATTTCCTTCCTTCTGCCCTCAAAATTAGTTGTATTCCATGTAAAAATGCATAATAATTTGTTTGCAACCTATATACTAGTAGCTGTTTGGCAGTAAAGCTTATATGAATAAATGTTATCCAGGTTCAGGCATTTTCATTTAAATCGGGGGGGGGGGGGGAGGCAACCTGCCCCTGCAACAAAACTCCGCCTGTACGCCTTTGTTCTGTGCTGCTCTGTATGAACTATATAATGCAATTCTGTTTCGCTGTGTGGACTTTGAGCCAACTTCTGTTTACCTTTAGCAATTACAGGTCAAAACTAAATTACTTCTACATGTAGTAGTTGCAAAAAGACTTTTTTTTACCACTCTAGAAGCTTTTTTGTTCAGCATTTTATTTTGTTTGTGGTATAAGAACTAATCCCCTTTTAGTAACAACTCGCACTAGAATACAAATTAGATGCCCATAAGAAAAGTGCCCATTTTGTAATGAAAAAGCCTTTTCCTTGACAGGTGATAGTAATTTGTTGAGTGCGTCATTAAATATAACATTTCCTTCCTTGATTCCTCTCTGTTGGTCCATTTGGTTATTTCCTGTTCCAACCAGTGCTCAAGGACTGGTGTATCAAATGTTGGTCTTGATAGGTAATACCAAAATGCATGTAAAAAAAGATACTAGTCATAACACGTGTGAAATTTTACCTTTTTACCAGTATGAAATTTTACCTTTTTTGAAAAATAAATCGGGGATGGTGATAGGTAATAAAAAG

Transcript

ctg235-5.22-1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01399	PCI	PCI domain	Domain	Interproscan
PF18098	RPN5_C	26S proteasome regulatory subunit RPN5 C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000717	Domain	Proteasome component (PCI) domain	Interproscan
IPR036388	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan
IPR036390	Homologous_superfamily	Winged helix DNA-binding domain superfamily	Interproscan
IPR040134	Family	26S Proteasome non-ATPase regulatory subunit 12/COP9 signalosome complex subunit 4	Interproscan
IPR040896	Domain	26S proteasome regulatory subunit RPN5, C-terminal domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10855	26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 12/COP9 SIGNALOSOME COMPLEX SUBUNIT 4	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0008541	Cellular Component	proteasome regulatory particle, lid subcomplex	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for ctg235-5.22-1 global RNA-seq network