Gene detail

Detailed information of ctg212-5.4-1 in Gigantopelta aegis Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
ctg212-5.4-1	INTRAFLAGELLAR TRANSPORT PROTEIN 88 HOMOLOG	chr4	117591417	117645851	+

Gene Structure

More details in Jbrowse Sequence

CDS

ctg212-5.4-1

ATTTATTTTTGTAGGGTAGATAATGAACCGGCTCAGTATGATGGAACAGGTGCATCTGGCTGGCGAGGAGGAAGATGACATGTATTCTGGCTTCAACGATTACAATGCAACACTGGATGTTGAGGATTTAGCTCATGATGAAAACTTCCAAAAAGCTGTTTTGCGGACTAGCCATGGCAGAAGGCCTCCCCCGACTGGCAAAGTTCCCCTCGGCACAGCTGCGAGATTGGGGACTGCTCAGAGAGGCCATGTTGGACTGCCATCTTCCATGGGAGCACGACCAATCACAGGAGCTGTTCAGAGTGATGGACAGGCTCGGCCAATGACAGCTGTCAGAGCAGCTGGCTTTACGTCAGCTGGTACAAGAGGCCCGGGTTTTGATCCCATGAACCAGTCTGGCAAGGGTCCTGCTCCTCCACTGGAGCCGAAACCTGAAGACAGTCCTGAAGAAAAGATTCGTCAGTTGGAGAAGAAAGTGAATGAATTGATTGAAGAAAGCTGTTTTGCAAACAGTCGGGGAGAACTTGGGCTGGCTTTGGAAAAGGCCAAGGAGGCTGGTAGGAAGGAACGTGTGCTTGTCCGACAGAGAGAACAGCTGTCGATGGGAGACCAGATCAACTTGGACCTCACATATTCAGTTTTATTTAATCTGGCCAATCAGTATGCAGCAAATGAAATGTTTCAAGAGGCTCTGAATACCTACCAAGTGATAGTAAAAAACAGAATGTTCAACAACGCAGGAAGATTGAAAGTTAACATGGGAAACATATATTTTCGACAGAAGAATTTCCCAAAAGCAATCAAGTACTACAGAATGGCTTTAGATCAAGTTCCAAATACACACAAAGAAATGAGAACTAAAATCATGCAGAATATTGGTATTGTGTTTGTGAAGATGGGTCAATACACCGACGCGATCACATCGTTTGAACACATCATGTCTGAGTCTCCGTCGTTCAAAACCGGTTTCAACCTGATTCTCTGCTACTTCGCTCTGGGCGACCGTGACAAGATGAGACGAGCCTTCCAGAAACTGCTCACTGTTGACCTGAAGATCGACGACGAGGATAAATATCTAGCACATGGGGAAGACAAGCAGTACAACTTGGTGCTGGAGATAATAAAGAATGTGTTTAATGAAGACAAGCAGTACAACTTGGTGCTGGAGATAATAAAGAACGATGCACTTAGGATGATAGAACGGGAGAAAAAATATGAGGCAGAACACTGTATAAAGACTGCAGCCAAAATAATATCTCCTGCAATTGAAGCAACCTTCTCACAGGGCTATGACTGCATGACAGTGTACTTATTGTTTATTACAGTAATATTTGGGCAGTTATGTCATTATGCCATAGAAACCCTGAAGTCATTTGAGAAAAAGGATTCTAAGGTTGCCAGCACTGCAGCTACTAATTTATCTTTTCTGTATTTTCTGGAAACAGACATGTCTCAAGCTGACAAGTATGCTGAGATTGCCATGTCAGCCGATCGCTACAATCCCGCAGCTTTAGTTAATAAAGGCAATGTCCTGTTTGCTCGACATGATTTTGAGAAAGCTCGGGAATTCTACAAAGAAGCACTTTCCAACGACTCATCTTGTGTAGAGGCACTGTACAACCTAGGTCTGTCTAACAAGCGCCTGACTCGCCTGGAGGATGCCCTAGACTGTTTCTACAAACTGCACGCCATTCTCAGAAACAGCCCCGAAGTGATGTACCAAATAGCAGACATGTTCATGCAGCTGATTGGTGTGGTGTCGTCCGACTCGAGTATTTTGGCCAGGATGGGAGAACTGTACGACAACGAAGGTGACAAATCACAGGCATTCCAGTACTACTACGATTCGTACAGATATTATCCGTCCAACATTCCTGTGATAGAGTGGCTTGGTGCGTACTACATCGACTCCCAGTTCTGTGAGAAGGCAATCCACTACTTCGAGAGAGCCTCCATTGTTCAACCCAATGAGGTAAAATGGCATTTGATGATCGCAAGTTGTTACAGACGAAGTGGAAACTACCAGCAGGCACTAGAAACATACAAGGGCATTCATCGCAAGTTTCCCGACAACGTCGAATGTCTCAAGTTCCTTGTTCGACTGTGTACAGATCTGGGGATGAAAGATGCTCAGGAATATGCAACCAAACTGAAAAAGGCAGAAAAAGCCAAAGAACTTCGAGACCAGCGAGCAACAAGTGGAACAAGACGAGGCAGTGGTCGAAGGCGTGATGGAAGTGCTGGGAGTGACCGCGAGGGAAGTGCTGGTGCCACACGGTCGTTTAGCGGCAAGGGTCAGAGAACAGCCGCGGTTAGGAAGCGGCCAACATTTGATGAAAATGAAGAGCAAGCACCATACCAGACGAGTAAAACACAAGAAATTGATGCATCATACTACGATCCCCTTGGGCCCCAGATGGAACGACCTAGAACCGCAGCAGCAAAACGAGATCCGCATCACGATGAGTTTGGAGATGAAGAATTGGGAGAAGACTTTCTTCCCGAATAATGTGTTTCGTTTTGTACCTACGTCCTTTTACAATGATTCAAGTTCATTCCACTGTGATTTCCCATCATGTCTAAAATGTTAGACATTAGAATTGAAGATGAGACTTGGGGATGACTTGTTACTCGAATTACATTGTTTTCACTTTGTATATCAGTCTTTTCTTCCGTGAATTGTTTCATGATGAACTAGTAGACAACTTTCTCAAATAACATTTTATTTCACTTTGTACTTTGTACATCCGTCATTCATTGAAATTCCATTCTACCATGGTTTCCCACAAAATGTAAAATGTGCAGACATTAGTTAATTAGAGTTTGGAGAAATACTTTCATCTCAATACCCCCGTCTGTGGGATGGTGCATATAAAAGATCCCTAATCAGAAAGAGTAGCCCATGAAGTGGCGACAGCGGGTTTCCTCTCTCAATACGTGTGTGGCCATATAACTGTAAATAAAATGTATCGTTAAATAAAACGTCTTTTTCTTTCATCTGAATACTTTCCATGGTTTTCCTGTTCCCATTTGTAAGATAAAATAAAGTTCACAGACTGGTTAATGATTTCTGGGTTTGAAGTCAAAAACTTGGAACAGGAGTTGTGAAATATTTTACATGTATGTCAGTCTTACCAGATTTCAATGTGTAACATAAACTGTTTTACATGTACGTCAGTCTTACCACATTTCAATGTGGAGGAGATTGCATTTTAGCTAAATTATAAATAATTTATTGCTTATATCTGTCCACAAGGTTTTGTGTCAGTTGTCCACGATACTGTGATTTGTTTGTAATGTACAAACTGTTAGAATCTGGTTTGTGTAATATATCAACTGTGCATGTCATGTCGTGTTTATACAATAGCTTAAAAGATGTTGGTTGTCTGCGTGTTATTCAGTGTTATTTATGACCAGACATGACTTATAATTGTTAACCATTTGTTTATATATATATATATAAAGTTTTTTGTTTAATAAAACCTTTCTGTATGTCCAATA

Transcript

ctg212-5.4-1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13174	TPR_6	Tetratricopeptide repeat	Repeat	Interproscan
PF13424	TPR_12	Tetratricopeptide repeat	Repeat	Interproscan
PF13432	TPR_16	Tetratricopeptide repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011990	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR019734	Repeat	Tetratricopeptide repeat	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR44117	INTRAFLAGELLAR TRANSPORT PROTEIN 88 HOMOLOG	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005814	Cellular Component	centriole	Interproscan
GO:0019894	Molecular Function	kinesin binding	Interproscan
GO:0036064	Cellular Component	ciliary basal body	Interproscan
GO:0042073	Biological Process	intraciliary transport	Interproscan
GO:0097546	Cellular Component	ciliary base	Interproscan
GO:0097730	Cellular Component	non-motile cilium	Interproscan
GO:1905515	Biological Process	non-motile cilium assembly	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for ctg212-5.4-1 global RNA-seq network