Gene detail

Detailed information of ctg194-6.3-1 in Gigantopelta aegis Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
ctg194-6.3-1	PRE-MRNA PROCESSING PROTEIN PRP39-RELATED	chr4	80078609	80093795	-

Gene Structure

More details in Jbrowse Sequence

CDS

ctg194-6.3-1

ATGAGCATTTGTCTGCACACCATGATTATCATGTGTATGTTTTCTTTTGCAGATCTTGAAATTGAAAAAGATTTGAAAAAAGAAGAGATAAAAAAGGAGAAAGAATCGGAATTAGAAAAGTACTGGAAGGCTGTGAAAGAAAATCCGACTGATTTCACTGGTTGGACATACCTGCTTCAGTTTGTAGAACAAGAGAATGACTTGACAGGAGCCGAAGAAGCTTACAATTCTTTCTTCTGTCATTATCCATATTGTTATGGATACTGGAAGAAGTACAGTGACATGGAGAAAAAACATGGAAATCTGGATAAGTCACTGGAGGTAAATATGTACCACTTTAAGTATATTATTGCACAGTATATGGTGTGCCGCGTTATCGTGTTTGTGTACGCGCTTAAAATAAACCAACAGATGTTCTACGCGAAGACGATGTACATTGATAAAAACAATAATAATAAAAAAAAAAACGTATCTAACAATTATGTTCTTCTGCAGACAAGGTCTTTCGAAAACACCTGGCAACAAAGACCAATATTCCACTCCATCTGCCTTCAAGATTGTATGAGCAAGCTATTGCTGCTGCAGGCACAGACTTCAGGTCAGACAAGTTATGGGACTCTTACATTTCCTGGGAAACTCTTCAAAAAACATGTTGAGGATCACCACCCTAAAGAAATCTTGTCACTGGATGAGTTTTTAAAATTGAGACAAGAGGTTGTGAAAGATGCTCAAGACGGTGATGAGCTGGCAACGGAGGGACCACCTGGAACTGATTCACCCCCAGGTGTTGATGCTCCCCCTGGTCTCGGCTACGATGGTGGCATGAGTGATGACGTAGAATCAAGAAAGCTGCGTGTTAAAATAATAGATATCAGAGAAGCTATGTTTAAAAGAAATGAAAATGAAGTCAGCAGAAGATGGGCATTTGAAGAAGCAGTTAGAAGACCATACTTTCACGTAAAACCATTGGAAAGAGCTCAGCTTAAGAATTGGCGAGAGTACCTAGATTTTGAAATAGAACATGGATCACACGAGAGAGTTGTGGTACTGTTTGAAAGATGTATGATTGCATGTGCACTCTATGAAGATTTCTGGATGAAGTATGCAAAGTATTTGGAGCAGCACAGTATAGAAGGTGTTCAGAATGTCTACCGACGAGCTTGTGAGATTCACTTACCAAAGAAACCGTACATACACATGGCATGGGCAGCTTTTGAAGAAAGACAACAAAATTACCAAGCTACTCGTCAAGTACTGATCAACATAGATAAGAATGTCCCCGGACTTGTGATGGTGGCAATGCGAAGGATCAGTCTAGAGCGGCGCCAAGGCAACGACACTGATGTTGAAAAACTCTTCCAAGATTATATTAACCAGTCTACATCTCCATCAGTCAAATCATTTTATTCCATCAAATTCGCTAGATATCTTCTAAAGATTAAAGGTAACTCTCAAAAAGCAAGATGTATTCTGACAGAAGCACTTGAAAGAGACAAGAGAAATGAAAAACTGTTTCTACAGTTAATAGATCTTGAGTATCAGACTCAGCCTGTAGATGTTGACCGAACACTGGAAGTATTTGATCGAGTCATCCAGAATGATGTTCAGCTGGATTTTAAGGTCAAAGTTTCACAGCGGAGAATGGAATTTTTGGAAGACTTTGGTACAGATATCAAAAGAATCACTGAAGCATACGACGAACATCAAAAACTAGTCAAAGATTTAAATACAGATCGCAAGAAGAAGCATCCCGACCAGTTAGATGATTCTTCACAGCCTCCAGATAAGAAGCAGAAGACTGAAACAATTAATGGAAGTGGAGACTCGACATCACACTTAAGCTCTACATCCACACCAGACACAAACCATGCATACAACTATTATTACCCTCCTAACCCAAGCAGCAGCTATCCCTATCATTCAAATTACGCTAACTATGGATCACAGTATGGGTCGTATTACCCATCTTATTAACAGTCTTGTGGACTAGCTTCTTCAAGTGA

Transcript

ctg194-6.3-1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
--	--	--	--	--

InterPro

InterPro term	Type	Description	Source
IPR003107	Repeat	HAT (Half-A-TPR) repeat	Interproscan
IPR011990	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR17204	PRE-MRNA PROCESSING PROTEIN PRP39-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000243	Cellular Component	commitment complex	Interproscan
GO:0000395	Biological Process	mRNA 5'-splice site recognition	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005685	Cellular Component	U1 snRNP	Interproscan
GO:0006396	Biological Process	RNA processing	Interproscan
GO:0030627	Molecular Function	pre-mRNA 5'-splice site binding	Interproscan
GO:0071004	Cellular Component	U2-type prespliceosome	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for ctg194-6.3-1 global RNA-seq network