Gene detail

Detailed information of ctg176-6.0-1 in Gigantopelta aegis Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
ctg176-6.0-1	TRANSPOSABLE ELEMENT-RELATED	chr8	41201136	41210226	+

Gene Structure

More details in Jbrowse Sequence

CDS

ctg176-6.0-1

TTCATTTGCACGCTTTGCACGTGTATTCCATGTTCCCAATGCTGAATTTCCGTATAATTGGAGCTTGCGTTCGTGTACGGTGCACACTCCAAATTCGACAATGGTACGACTTCAACTGACTATCGAAGATCGAGGACGGGCTATTGCTTGGCTTCAGGATGGCAATACGCAAAGAAATGTTGCTCTGAGACTTGGTGTCAGTCAGAGTGTCATTGGCCGACTGTGGCAACGGTACCAAGCAACGAATTCTGTTCGAAATCGTCCACGTCCGGGAAGACCCCGAAGCACTACAAATAGAGAGGACCGCTACATCACCAATATGGCTCTACGTCAACGCACAACCACTGCACGCCGATTACGTGACAATCTGCGGTTTGCGACTGGAACTCGAGTGTCTGATCAAACCATACGCAATCGTCTGAGAGCCAATAATCTACGCTGCCATCGCCAGGCTGTTCGACCACCACTCCTACCACGTCACAGAACGGCCAGACGTCACTGGTGCACGCTTCATCTGCGGTGGCAACGTGTTCAGTGGGGTCGAGTGATGTTCACTGATGAGTCCAGGTTTAGTCTCCAGTTCAACGACGGTCGGGTTCGTGTCTACAGACGTCCTGGGGAGCGCTTCGCTGACGTTAATGTTAGACAACGTCACCGGTTCGGTGGTGGCAGCGTCATGGTGTGGGGCGGCATCTCTATCCACCACGGGACCCCCCTCTGTGTGGTGGATGGCGATCTGAATGGAATCCGCTATCTGAATGAGATTATCCGGCCGTTGGTTCGCCCAGGCCTTCAGCAGATTGGCGGCGGGGCAGTTCTGCAGGATGACAATGCCAGACCCCACCGCGCCAGGGTGGTAACAGACTTTCTCAGACAACAAGGTATCGCCAGGATGGATTGGCCAGCATATTCGCCTGACTTGGCCCCAATAGAGCACGCCTGGGACGAATTAGGCAGGAGAGTTCGGGATAACCATGCCCCTCCGGCCAACCTTCATGATCTGGGTCAACTTCTTATGGCAGAGTGGCAGGCCATTCCCCAAGAGTTCTTCAGACGTCTGATCAACAGCATGAGGCAACGATGTGTCGAGAAAAGTTACAACATAACTGTACGGGACAAGGATCAACCCCTCCTGTTTCACAAACCCAAGAGAAAAGGACTTCCTGGAGATAAAGAATCTCGTGAAGCGGAATACATCTGTCTTGTTCCCGAGCTATGCTTCATGACAGGATTGTCTGATGACATGAGGTCCGACTTCCGGCTCATGAAGGACATTGCTACACATACCAGAGTCACACCTATGCAGAGAAAACTGGCGATGCAGAAATTTGTTAATTCTGTGAATTCCAATGAGCAAGCATACCAACAGTTGGCTGATTGGGGCTTGGAATTGGACAACAACACAATCCCATGTCATATCTGTGTAAATTGGTCCCCCTCCACGTGGGGGAAGGCTAAGAAGCTGTCAAAAGATGCCGAGCGTAAGAGGATGATTAGACGTGAACGGGACGGGCGGAGCACAGTGGCAACCTCCGGGGTCGTGCTCCATACCGATTTGCCGTCGGTCGGCAAGTCGGTGTCCAGTTCAAAGAGCTCGCGGACAAGTGGTAGGCGCAAGGGCGCCTCCTCGTCTGTTCGCCATCTTCATGGTGATACCAGTAAACCCGAAGCGCCGCTTGGCGCGGAGGGGGCACTGTTGCTCCCTGCTTCTTCCAGGTCGGGCTCCGTTCCACCTGGGGATTTGCTTTTGCCTCCGTCGGTGGAGGCGGCGCCTGTTACGGTTGTAACGGGGGCGTCAGTCGGAGGGAGTGCAGTCGTGGCAGGAACGACTGTGTCTCTCAGTTCCGACTCCCATCTTGCTGATGGGGGCAGGGTTATCGGTCCTTCTGTGGAGGGGTCGATTAGCTCTAGAATGAAGTCTGCTTCGTGGCGCCGTTTGTCTCACCAGATTTCTGGTGCAGGGTTGGTCGTGGTGTCTGAGGGCGCCGTTTCGGCCAACCCGTCTTTCGGCGCTACTTCGGTGATTGAACCACTTGGCGAACTCGCGAAGTCTCACAACGTTGTCTCAGTCATGGAGCCGGGTGGCGTTGTTTCGTGTGCGACACCAGTGGGCGTCCCTTCTGTTGTTGGGGCGCCTCTACAGCGTCATCAACTTTTAGATCATTCGCATGTAGCTACGTCAACTGGGTTGGCTAATCCACACGTGATCCGACTGGTGTGCGCGGATGCAATTCCGTCGGAGGAGGCTGTTCAGTCTTACAAGGGTGTTTCGTTTGGAAACCGGCCTTTAGCGACGGACGCTCCGCGGCAGGATTTCGGCTTGCCGTTAGCGCACGAAGCGCATGATTCTCTTGCGGACATTGATGCTTTGATTGCGGATCTGGACCCATGGGTTTTGTCGGTTGTCCGCAACGGATACAGAATTCCGTTTTCATCACCCCCTCCACTGACGTCCTCCCCCCGGTTACCTGCAGTACTGTCTATCGACAAACGAATACTGGTGGAGAAGATGGTTGTCGAGTTTCTCAACAAGAAAGCCATCCAGGAGGTAGATTTGGGCACTCCGGGATTTTATTCCTATCTGTTCTTCGCCCAGAAGAAGAATGGCGAGTGGCGACCAATTCTAAACCTGAAGCTGCTGAATTCTAACGTTATTCCATCTATGAAGATGGAGACGGTTCAGTCTGTTCGCGCTTTGCTTCAGGTGGGGGAATGGGCGGCGTCCATCGATTTGAAGGGCGCTTACCTGCATGTTCCAATCCATCGGGATTTTTAG

Transcript

ctg176-6.0-1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01498	HTH_Tnp_Tc3_2	Transposase	Family	Interproscan
PF02170	PAZ	PAZ domain	Domain	Interproscan
PF13358	DDE_3	DDE superfamily endonuclease	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002492	Domain	Transposase, Tc1-like	Interproscan
IPR003100	Domain	PAZ domain	Interproscan
IPR009057	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan
IPR036085	Homologous_superfamily	PAZ domain superfamily	Interproscan
IPR036397	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR038717	Domain	Tc1-like transposase, DDE domain	Interproscan
IPR043128	Homologous_superfamily	Reverse transcriptase/Diguanylate cyclase domain	Interproscan
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR047655	Family	Transposase IS630-like	Interproscan
IPR052338	Family	Transposase_5	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23022	TRANSPOSABLE ELEMENT-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0006313	Biological Process	DNA transposition	Interproscan
GO:0015074	Biological Process	DNA integration	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for ctg176-6.0-1 global RNA-seq network