Gene detail

Detailed information of ctg1743-0.4-1 in Gigantopelta aegis Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
ctg1743-0.4-1	HIV-1 REV BINDING PROTEIN 2, 3	chr9	64655761	64676806	+

Gene Structure

More details in Jbrowse Sequence

CDS

ctg1743-0.4-1

ATGCCACGTCTCAGTGAACCGCAGAGAAACAATGCCATCGGCCGACTAGACGCAGGCGAATCCAGAACGGCCGTTGCCAGGGCATTCCATGTGTCCCCAAGCACCATCTCCAGACTGTGGGACCGTTACCAGCAACATGGATCAACATGTGACCTCCCTAGATCCGGTCGACCACGGGTCACTACCCCCGGGCAGGACCGCTACATCCGGGTACGCCACCTTCGGGAACGATTGACTACTGCCACCTCCACAGCCGCAGCAATACCAGGTTTGCGCAGGATATCCGACCAGACCGTACGGAACCGCCTACGTGAGAGTATTTGTGCTGACCTTGATGTTGTGGAAGGAAGCATGTCAGTTCGCACTACGAGAAGAACATGGGATCCTTACATGATTGTTAAAGCTCGGGATCTCATCAAACTGTTAGCAAGAAGTATGCCGTATGAACAGGCTGTCCGTGTGTTGGATGATAATGTAGCCTGTGACATCATCAAGATTGGTTCCATGGTGCAGAGTCGAGACCGGTATGTGAAGAGACGCCAGAGACTCATTGGACCGAACGGTTCAACTCTGAAGGCAATTGAGTTGCTGACAAGCTGCTATGTTTTAGTTCAAGGAAACACAGTGTCCTGTCTTGGACCACACAGAGGACTTAAAGAGGTCAGGAAGATTGTTGAAGACACCATGAAAAATATTCATCCAGTTTATAACATAAAGACGCTGATGATTAAAAAGGAGTTGGCCAAGGATCCCAACCTGAAATATGAGAGCTGGGACCGGTTTTTGCCGCACTTCAAGTCAAAGAACATCAGCAAGAGGAAACAACCCAAGAAGAAACACGTCAAGAAGGAATACACGCCTTTCCCTCCTCCTCAGCCACAGAGTAAAGTTGATAAGGAACTGGCATCTGGAGAATATTTTATGAAGGAAAAGGAGAGGAAGATAAAGAAAATGCTGTTAAAAAGGGAACAGCAGAAGCTAAGTGAAGAAAAGCAAAAAGAGAAGAGATCAAAGTCACTGATTGCACCAAAGGAACCTGTACATGTTAAAAAGTCTGTCACCCAAACATCAGGTGATGTTGATATTCCAGCTTTGAAGAAAAAGTTGAAGAAGATGCAGAAAAAGAAGAAACGCTGATGAGAATGATAGCATGTGTGTATCACTTCTGATACTGAACGATATGACCGTGTGCTGTCCAAATGTCTTATAGTGGTGATGGAAACTCAAGATTCTTTGAAAAAACTATCTAAAGAATACCTGCTTCACTTGGTGCAGTTTCACAGACACTGAAGACAGATACAGAGTTGATATGGTTTTAAACTTGCCTCAGCTTATGGACATTGTATATATCATTTTATTATCCACCTAGTTCAAGATTTACAGGGAAATAAATCAGTATGATACATGTGTTTCATTACGATTTTATGTTACCAACGAATAACACAATTTTGGGAAGCAACGTCTTAGCTCTGTGTAATCGCTTAACAAAATGATATCATTTCTGAAAATGACATTTCGTTGTCTCCCAATTTGAAAGATTTTCACATGCTCCTTGTTATTCATAAAAAATAATATAATTATCAGTACGACACACCAGTCCATATAATAATCTCTGTAACACATCAGTTTACAGTCCTATGACAATTGAATGTTACTTAATTGCAACTGAGTAATATGATATACTATTGGCCAGGGCCCCGTTCCACAAAGCGATCTTAGCACTAAGATCACCTTAGTGCATAGGGTAGCTATGCACTTAAGGTGATCTTAGGGCTAAGATCGCTTTGTGGAACGGGGCCCAGACAACTGGTCAGTCTTTGATTTCATATTAAAGTGACAGACCCTAGTTTTTAAACACTACAACGTATTTTTCACTATTAAAGCCATTTATGATAATTGATATCGGACATTACTTAAATTTTATTGTTTATAATGTCAGTTTCCATACATCCGAAGTGTTTATGGTTATCTTGTTTGTAATGCCATAAAATTAAATTTTTCATAATTCTAAAGGAAGGAAATGTTTTATTTAACGACACACTCAGCACATTTTATTTATGGTTATATGGCGTCAGACATACGGTTAAGGACCACACAGATATTGAGAGAGGAAACCTGCAGTCGCCATTTTATGGGCTACTCTTTTCAATTAGCAGCAAGGGATCTTTTATATGTACCATCCCACAGACAAGGTAGTACATACCATGGCCTTAGATATGCCAGTCTTGGTGCACTGGCTGGAACGAGAAATAGCCCAATGGGCCCATCGATGGGAATCGATCCCAGACCAACCGTGCATCGAGCGAATGTTTTACCACTGGCCTACGTCCCGCCCCTAATTCTAAAGATGCACATGCGTCGGAGAAGCATTGGTTGTGGAAACGAGCTCCAGTCTTTATTATTTTAGGGAATTTCCCCATTTCAACGTCACTGTCTCTTGTTTCACTCTATTGCTTGTAGATTAACCAAACTTACCATCTTGTTTTCATGGGTTCAAACTAGGGTTTGTGACTTTAAGCAGGACGTAGCCCAGTGGAAAAGTGTTTGCTTAATGCACGGTCAGTCAAGAATCAATCCTCGACCCGGTGGTCCATTGAGTTATTTCTCGTTCCAGCCAGTGCTCCACGACTTGTATTTCAAAGGTTGTGGTATGTACTATCCTGTCTGTGTGATGGTGTATAATAAAGATCCTTTGCTGCATTAGAACAAATTTAGCAGGTTTTCTATGATGACTACGAGTCAGAATAACCATATGTTTGACATCCAATAGCTGATGATTAAATAATCAATGTGCTCTAGTGGTGTCGTAAAACAAAACAAACTTTAACTATAAGCCATATTGTGTGAGAAGTTTTCAAAGTCAGACTGGGTAGTAGCTTGGGTGTCTTGAATACACTATTCCCATGTAGTTTTGTGTGATCTGTGGATGGTAGCAAATAAAATATTGTGGAAAATTGTCAGTTTATTATGGTGATCACAATGAATATTTTTCGTAGAATTTGTTGATATTTTCAAGGTTTTAAATTTTTGAGGCTGCCCACTTAACCTCGAAACTCATGCGTGGGTATCTCATAAAGAAACCACACTTTCGTTTTACTTCATTTGGAAATTCAGTTTACGACCTGGGGTCTCATGCTGTTTTTTCAACCATTACAAATGTCATTCACCAATTTGTCAAAGAATTGCACACAAATCTAGTGTACTTTGTAACAAGTCATGTTGATGTTGCGCACAATCTGTTAGGTTACCCAATGACGTAATTTAAATGTGTGGTAACATTTTATGTTTATACCTTACAGTTATGATGTCAACAACAAGACCTCTGGCAATACAGAGATTAAAAAGAAAAAAACTTTAATCCTGACAAAAAATCTTTATAACAACTGTTTGTACTTGGTAATCTTTCTCTCTATATTTTTTTTATTTATTATTATTAATTTTTTATTATTTAAAAAAAAACATGTTCAGAATTAAAGTATTAGATGTGTTATTTTCTGTTTTGTGTAAGATGATGTCATATGTCTTTGTACAAGTTAATCTGTAACACATATTACTATGTAAAGGTGTTATTTACTTGACATGTTAATTACAACACCCCATGTAGTGTAATACATCTTTCATCATTCCTTAATTTTGTGGCCTTATGTTTTTTTACCTTATTTTTTTAAATTTTTACAATGAAAGGGAACTGTTC

Transcript

ctg1743-0.4-1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13518	HTH_28	Helix-turn-helix domain	Domain	Interproscan
PF17903	KH_8	Krr1 KH1 domain	Domain	Interproscan
PF21800	KRR1-like_KH2	KRR1 small subunit processome component, second KH domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR004087	Domain	K Homology domain	Interproscan
IPR009057	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan
IPR024166	Family	Ribosomal RNA assembly KRR1	Interproscan
IPR036612	Homologous_superfamily	K Homology domain, type 1 superfamily	Interproscan
IPR041174	Domain	KRR1 small subunit processome component, first KH domain	Interproscan
IPR048548	Domain	KRR1 small subunit processome component, second KH domain	Interproscan
IPR048549	Domain	KRR1 small subunit processome component, second KH domain, eukaryotes	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12581	HIV-1 REV BINDING PROTEIN 2, 3	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0005730	Cellular Component	nucleolus	Interproscan
GO:0032040	Cellular Component	small-subunit processome	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for ctg1743-0.4-1 global RNA-seq network