Gene detail

Detailed information of ctg1708-2.3-1 in Gigantopelta aegis Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
ctg1708-2.3-1	BONUS, ISOFORM C-RELATED	chr7	9430916	9439591	+

Gene Structure

More details in Jbrowse Sequence

CDS

ctg1708-2.3-1

TGAATATAGTCATTAATTATTGAATTTCTTCTCGAAATTTTAGGTCATCATGGAAGAGATGGAATATGTTACATATCGACGCAAGTTCGACAATCAAGCCTAACTTTTCATTTGCCTTGATATACGACTAACACAACACGAGAGGTATTGTGACTTTACTGAATGTGTTCGAATGAAAGTTAAAGCTAGGTATTCAAAGTTTCATTCATGATGGCTGAGAGTCCGTATGTTCCAATTCTCGAAATAAGAGACGAGTTCGTGACCTGTGAGATTTGCATGGAATATTTCAACGATGGAGAGAAATGTCCGCGCATTCTCCCGTGTCACCACTCATTTTGTTGTCAGTGTCTCATTTCTCTCTGGGAAAACTCACCACAAGGAGTGACGTGTCCTAACTGTCAACACGTATGGCCTGTTCGCAATTCCATCGAGGCAACATTTCAACAGAACAAGGTACTAAGTAATTTAGTTGAATATATTGCGTTGAAAAATAGAACAGGAGATACAATCTGTCATGAATGTCCAAATGATTCAAAAGCGTCATTTCGCTGCTTCGATTGCCAGCAGTATATGTGTGAAGGATGTACAGCTTGTCACCGAAAATTTACAACTACAAAGACCCATAAGACGGTTCTCATAACGGAATTGATTAACATGTCTCAAGATGAGTATTTCCAGGAAAATGAGATGTGTCAAAATCACGAAAATGTTAAGTTAGAGATTTTCTGCAAGGGTTGCTCAACACCCGTGTGTCCCAACTGTGCCCTTGTCTCCCATAGGGATCATGATATATGCAATCTGAAAGATATTTATAATGAGAAAAAAACCTTAATCAGAGCTGGTTTGAAGTGTTTACAGGTATCAGAAGAAACACTCAAGACAGTTTCAGAAAGCTTAGCAGTAGGTAATCAAACAGTAGCTGTGAGAGAACGTAATATGTTGATTGACATTGATGAAAAGAGTAACAAAACCATTGCCAAAGTTATGGAAATAACAAGACGGCTAAAGGAAGATGTTATTTCAAAGGCAGCCAAACAAAAAGCTCTTAGGACTGAGCAGATAGAATTGATTGCACAATCGCAAGGCGTCAAGGCAGAGCATATCCTGCATTGTCAGCAGGCTTTGCAGTTTTCATGTCAGGTAGAATTAATTAACATGTCTCATGTTCTTGAAAACGAAACGAAGAATCTGATGAAAACGCCAAAACTACCTAAACTGAAGATGGGGACAATTAACATGGATCTAACAGTTTTTGAACAGATTGATAAAACCATACAGAAAACTGCAATCCTTGATGACAAGCCAGAATTAAGTCCATGTATTGAAGTGATGGACGCCACCATAGAAGAAAATTCAACGGTCGTAACAATTGTGTTGCTTCCAAAGGAAAATATGCTCAAGGACAACAAAATAGTGGTAGTATCAGCCATACAATGTGAAGACGTCCACCAAAATCTAGAACAAAGAGTGAAAACATTTGCTGATATTGCTGAAAGTCTCCAATACAGACATGACATTACGGCTCCTGACAAAACTTCCATGAGTATCAATGGTCGGCAACTGTCTGGGGACAGATTTGTACTTCACAAAAGAGAACAGGGATTCCAGGTGATTCCCAACTATCACATGAGAAACCAGACGCCGGGCACTGCTGGTCAGACCCAGATGCGGGCCCCTATGTATGCTGCTTCCATGGCCGGACATGCGCAGCGAATGGGCATGCCTACAACGATGCAAAATCTACATCTAAGTGCACATAAACCTGGAAGACCTAGAAGACATTACACGACGTTCGAAGAGCACATGGGGGAAACACAAATGAGACCCAGAACAGACTTCAGTGCATGTCAACGTCCACAGCAGTCTGTGCTGATTCCAGGCCAGGAGCCACTGGCTGCCTCTCCCCCACAGGAGCAGAAACAGATGCTGGGAGAACGCTTGTTCCCACTCATCCAGAGAATGCAACCCGATCTGGCCGGCAAAATCACAGGAATGTTGCTGGAGATCGACAATTCCGAACTGCTGCACATGCTGAAATCGAGCGTGTGGCTGAAAGCAAAGGTAAATGTAATACTGTTTTGTGATAGGACAGTCCTTTGTAATCAGGGGTAG

Transcript

ctg1708-2.3-1

Protein

Gene family

Gene family	Subfamily
Ubiquitin Family	E3\|E3 activity RING\|RING

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00097	zf-C3HC4	Zinc finger, C3HC4 type (RING finger)	Domain	Interproscan
PF00643	zf-B_box	B-box zinc finger	Domain	Interproscan
PF00658	PABP	Poly-adenylate binding protein, unique domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000315	Domain	B-box-type zinc finger	Interproscan
IPR001841	Domain	Zinc finger, RING-type	Interproscan
IPR002004	Domain	Polyadenylate-binding protein/Hyperplastic disc protein	Interproscan
IPR013083	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR017907	Conserved_site	Zinc finger, RING-type, conserved site	Interproscan
IPR018957	Domain	Zinc finger, C3HC4 RING-type	Interproscan
IPR036053	Homologous_superfamily	PABC (PABP) domain	Interproscan
IPR047153	Family	TRIM45/56/19	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR25462	BONUS, ISOFORM C-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0006513	Biological Process	protein monoubiquitination	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0046872	Molecular Function	metal ion binding	Interproscan
GO:0061630	Molecular Function	ubiquitin protein ligase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for ctg1708-2.3-1 global RNA-seq network