Gene detail

Detailed information of ctg1568-1.20-1 in Gigantopelta aegis Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
ctg1568-1.20-1	DNA-DIRECTED RNA POLYMERASE	chr14	47201620	47208718	+

Gene Structure

More details in Jbrowse Sequence

CDS

ctg1568-1.20-1

ATGGATAGCAATGAATCGGGCCAAAGTGATGATAGTGACGAAAATGATGATGGGAGTGATGAAGGCGAGATTGAAAGTAGGAAACAAAAGGTGTGTTCAATAACAGAAGCGGAGAATGAACTGGTGAGTTACCTACACTTGTATGGTGAACTGGTGAGTTACCTGCTCTTGTATGTGAGTTACCTACACTTGTATGGTGAACTGGTGACGTCCAAGCACAGGGAGGAAGCGAGTGAATATGAAGATACCGATGACATTCTGATAGCCAAACTGAGAAAGGGACAGGAACTGAAGATCAGAGCGTTTGCCAGGAAAGGTTTTGCCAAGGAGCATGCTAAATGGAATCCCACGTCTGGTGTGTCATTTGAATATGACCCAGACAATGCCCTGCGACACACACTGTTCCCAAAGCCAGAAGAATGGCCAAAAAGTGAATTTACTGAATTGGACGAGGAGCAGTACGAAGCAGAATTTGATGTGTATGGCAAGCCCAACAAGTTTTTTGTCAACATCGAAACCTCAGGATCATTAAAACCTGAAGGGATTGTGTTCTCTGCCTTGTCTGTCATCAAGAAGAAACTCAGTGATTTACAGACCCAGCTCAGTCAGGAGATTGCACAGGACGCATTGACAATATAGATTTGACTACACCAGATTACTGACAATATAGATCTTACTACATCTCACTGCTGAGAACACAGATCTGGTTGTAGTACTGACAATACAGGTCGTATTACGCCACATTGCAGACAATACAAGTGTTATCTGACAGCAGACAATACAAGTCTTATTTGATCTCTGACAGTATAGGTCTTATTATACTACTGACAATACAGGTCTTATTACACCACACTGCGGACAGTACAAGTGTTATCTGACAGCGGAAATACAAGTCTTACTTGATCTCTTACACAGGTCATGTGTCATTGCTGACAAAGAATTTTTGATTCATTGAACAGGCTTAAAGCTGGATTTTCATGAATGAGGTCACAATCTGTAGCAAAATTCAAAGTTAGGTATCAGCCAAACAGTGAAAATGGATGTAGATGTACAAAGAGCATGCAATTCTTTAATTAGCTTTTTGGTGAATTAATAATGACATGTATTCGCTAAATTGAACTTAATTCACATTTGGTGAACATCAGGTTAAACCATGATTGAAAATACACATCATATTCTGTCATTAACAGTATTCATCATATTCCATGAGGACAGTATCAGTTTGGGAGTTTGGGTGTATTTCTTGAGCAAGAATGCTGGGAATAATTCTAGTGAATGTTATTTGTGAGGATGACGTATCACAGACAAGTATCTCACATTGTAAAGATAAAGGTATTTCACACTATGAAGATAAAGGTATCTCACACTGAAGATAAAGGTATCTCACACTGTAAAGATAAACTTGCACTGTAAAGATAAAGGTAACTTGCACTGTAAAGATTAAGGTATATCTCGCACTGAGAAGATAAAGGTATCTCTCACTGTAAAGATAAAGGCATCTCGCACTGTGAAGATAAAGGTATATCTCGCACTGAGAAGATAAAGGTATCTCGCACTGTAAAGATAAAGGCATCTTACACTGTGAAGATAAAGGTATCTCTCGCTCTGTGAAGATAAAGGTATCTCGCACTGAAGATAAAGGTATATCTCGCACTGTGAAGATAAAGGTATATCTAGCTCTGTGAAGATAAAGGTATCTCGCACTGTGAAAATAAAGGTATATCTCGCTCTGTGAAGATAAAGGTATCTCTCTCACTGTGAAGATAAAGGTATTTCACACTGTAAAGATATGTGAATCTTTCAATTTAAAGATGGTGTCAATATATTTTCTCACTGTGTAAACATATAGGTAACTCAGTTTAAAGATACAGGTTACTGAAGTATTTCAGTGTAATGATATTCAGTATCTTCCAGTGTAAAGATATAGGTATCTCACAGTGTAAAGATATAGGTATTTTACAATGTAAAGATATATGTATTTCACAGTGTAAAGATATATGTATCTCACAGTGTAAAGATTATTTTGTATATTACACTGGAAAGATATATGTATCTAGCAGTGTAAAGATATAGGTATTTTGTAGTGTAAAGATACTATAGTTACCTTGCATTGTAAAGATACTAAATTATTTCAGTGTAAAGATATTTTAGTTATCTCACAGTGTAAAGATAAGTAATTTAACTGTTAAAATATCTTGAAGGAACTAGTAAAAAAGAGAAATGGAAATTCAAAAGTGGATTTATATTTAATTTGTTCACCAAGTTGTAATGACTTAAGCTGGATTTTGTACAAATAAAGATTGTGAGGAAATA

Transcript

ctg1568-1.20-1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01193	RNA_pol_L	RNA polymerase Rpb3/Rpb11 dimerisation domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011263	Domain	DNA-directed RNA polymerase, RpoA/D/Rpb3-type	Interproscan
IPR036603	Homologous_superfamily	RNA polymerase, RBP11-like subunit	Interproscan
IPR036643	Homologous_superfamily	DNA-directed RNA polymerase, insert domain superfamily	Interproscan
IPR050518	Family	Archaeal Rpo3/Eukaryotic RPB3 RNA Polymerase Subunit	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11800	DNA-DIRECTED RNA POLYMERASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0001055	Molecular Function	RNA polymerase II activity	Interproscan
GO:0003899	Molecular Function	DNA-directed 5'-3' RNA polymerase activity	Interproscan
GO:0005665	Cellular Component	RNA polymerase II, core complex	Interproscan
GO:0006351	Biological Process	DNA-templated transcription	Interproscan
GO:0046983	Molecular Function	protein dimerization activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for ctg1568-1.20-1 global RNA-seq network