Gene detail

Detailed information of ctg149-8.21-1 in Gigantopelta aegis Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
ctg149-8.21-1	MALATE DEHYDROGENASE	chr11	11877367	11902662	-

Gene Structure

More details in Jbrowse Sequence

CDS

ctg149-8.21-1

ATGGCAGCTTCCACAAAAAGTCACGCTGTTAGCAAAGAGTTACCAAAACATATATCACTTGATCCAGATAAGCAGAAAGAATTTGAGACTAAAGTAAAAGCGGTAAAGAAAAAGAAAGACAATGCGAGCTTGACTCCTGGTGTTGTTTACCTCGGACACATTCCCCATGGGTTTTATGAGAAGGAGATGACATCTTTTTTCTCACAGTTTGGAAGAGTTACCAGACTGCGTCTTGCTAGAAGCAAAAAGACTGGGGCTTCCAAAGGATATGCATTTATTGAATTCAGGAGCGAAGACGTGGCTAAGATAGTTGCTGAGACGATGAACAACTACCTGATGTTTGAGAAAACTCCTGAAATGGCTTACACTGGGACGAATTTTGGTTTAGCTAATTTACAGATCTACAGTCAATTTGTAGAAAAGTCGATTCATGATGAAACATTCAAAGGGTGCAAACGTCGCTTCCGACTTCCCAAAGCTCATCTGATTTCCAAGCGAAGGCACAACACTGTGAAATCTGCAGCAAAAGAAAAAGCCACCAGGAACAGGTTTATGAAGAAACAGAAAAAACGCTTCGAAAAGTTGGCAAAAATGGGCATCGACTACAAGCTAGAGGACATAACCCTTGTGAAAAAAACATCAAGTGAATCGGACGAAGTGGAATCGGCTAAATCGATGAAGACATCTCCAGAACTCGACACATCACTCAAATTGAACACATCTGCGGAACAGAATGCAACACCCAAACTGAAGACAACAACACTGACACCCAAAAGTGCGAGCACTCCTAAAGGAGCCCTCCCATCTCCTCAGATGGATGCCAGTGATGAGGAGATCTCCTTTAAGACTCCTCCAAGCTCGGTGAAGTCACCAGCGAAGGTTGCTGTCAAAAACAGCTGGAAAAACTTAAAACGCCTTTCGAAGGCGATGCCCACTCCCGAGACTGTGAAAGTTGGTGACGGAGGAGAGGTCCAGGTGTTGAAGGAGGATAGTAGTGATGAGGAGATCTCCTTCAAGACTCCTCCAAATTCGGTGAAGTCGTCCAAACTGCGTCGGACGTCCAGCGGTTCTGTGTTAATAAAAGAAGACACACCGAGGTCATCCCGCTCTGGGACGCGGATGATGGAAAAAAAACTGGATGAAAATAAATCATTGGCCTTAAAGAAATCGTCAGGCTCGAAGAAAACAAAACTAGGTGTTGAGAAATCGTCATCAGTGTTAAAAATGAAGAAAGCGCTGGCGTCAAACTTGAAGAAAACTGGGAGGGCAGACTGTCCATATTACGTGAGAACAGAGTTGCTTGGTGATCGCCTTGAACGAAATTTATCCGATTTCAAAGTACACAAGATAGTGAAACAGCCTGATGACTGGGAGAACTGGCTGAGAGAAGTGTGTGAGGAGAAAGGCTGGGACCACAGCAAATCGCCTCTGGTATGGCGGGAGCTGATCGACCGCGGAGGGAAGGGCGTCCTCATAGGGGGCGCCAACGAGTTCCAGGAGTACGTGCAGGCTTACTATGACCTTGAGTCGGCCATGACCAGCGACGACATGCTGAAGTGCGCTGATGAGAACCTCCAGACTAAGATCGAGGTGGATGTGGATCAGAAGGAGCTGAAGTCGCAGAGCACGCCCCTTCACGTGTGTGTCACGAACGCGTCGCAGCCCGTGTCTTACAGCCTTGTCACCAGGATCGTCAGCGGGGAGGTCTTCGGAGAGGACGCCGAAATAGCACTTCATCTCCTGGATGAGAAAAAAAATGCTGACCGTCTGTCAGGGATGGAGCTGGAGGTCTATGACCTGGCCGAGCCTCTGTTGAGACAGGTCTACGTCACGTCGGACCCGCGGGAGGCTTTCGCCGACTGCAGTGTGATCATTCTTCTCGACAGTGTCGACAGACAGGAGGAGGAGACAAGAGAGAGCTGGTTGGAAAGAAACGCGGATCATTTCTCGAACTATGCCAAAATTATTAACGAAAGGGCCGGCAGAAACTGTAAGGTGCTTCTATCTGGGAGTGGGCCGATAAACTTCAATGCGTACATGATGATCAAGAATGCGCCGAACGTGCCCAGACAGAACATCGTCGGGTTGTCGCGACTGGTGGAGAACCGCGCAAAAGCCGTGATGGGCGAGAAACTGAAGGTGAACACCGCTGACGTCGTCAACGTGATCGTCTGGGGCAGCGTCAATGGGTGTCACTACATCGACGTCAGTGAGACGCGCGTCCACCGGTACGACGGCGCCATCTGGGGGCCTCCATCTTTCTCCGTGTCTGCAGTGGAGATGGTGCACAACACGGCCTGGCTCGAGAAGGACTACATAGAGCTCGTCAAGTCTCGCCATGTGAAGGTCGAGTCTGCAGTCGGACGCAAGTGTTGGTACGATGTGCCCGAGGACTTGGTGTTTTCCTTCCCGGTGACTCTCGACCCGAAAGGCTACTGGAATGTGGTCCAGGACATCACACTCACTGATGAGACGAAGGCCAAACTCAAACTTAGTTACACGGAACTGATTGAAGAAAAGCAAGTAATGTTTCCGCCACCGGTTGTCGAGTTACAAGAGTCGGCTAAAGTCAGCGAAACAGACACACAGAGCAACAAGCAACAGACGCCCGATCAAGTGGCGAGTGGGGGCACGGAAACGACAGAAGGAGGACAAAGCAAGGAAGTGAAAGAAGGAGAACAGGAAGTACAAGGAGAGCAGGGAGTGAAAGAGGAGGACACAGAAGCAAAAGACAAGGAAGAAGAAAGTGAAGAACAGAAGGACGCTAAAGATGACAAGTCTGGTGACATTGAAGAGGAACCATCCCAGTAA

Transcript

ctg149-8.21-1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00056	Ldh_1_N	lactate/malate dehydrogenase, NAD binding domain	Domain	Interproscan
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan
PF02866	Ldh_1_C	lactate/malate dehydrogenase, alpha/beta C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR001236	Domain	Lactate/malate dehydrogenase, N-terminal	Interproscan
IPR010945	Family	Malate dehydrogenase, type 2	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR015955	Homologous_superfamily	Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal	Interproscan
IPR022383	Domain	Lactate/malate dehydrogenase, C-terminal	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR036291	Homologous_superfamily	NAD(P)-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23382	MALATE DEHYDROGENASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0003824	Molecular Function	catalytic activity	Interproscan
GO:0006099	Biological Process	tricarboxylic acid cycle	Interproscan
GO:0006107	Biological Process	oxaloacetate metabolic process	Interproscan
GO:0006108	Biological Process	malate metabolic process	Interproscan
GO:0006734	Biological Process	NADH metabolic process	Interproscan
GO:0016491	Molecular Function	oxidoreductase activity	Interproscan
GO:0016615	Molecular Function	malate dehydrogenase activity	Interproscan
GO:0016616	Molecular Function	oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	Interproscan
GO:0030060	Molecular Function	L-malate dehydrogenase (NAD+) activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for ctg149-8.21-1 global RNA-seq network