Gene detail

Detailed information of ctg129-4.1-1 in Gigantopelta aegis Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
ctg129-4.1-1	UBIQUITIN-CONJUGATING ENZYME E2	chr14	8587644	8612641	+

Gene Structure

More details in Jbrowse Sequence

CDS

ctg129-4.1-1

TAATAATTCACTTCCTGTACCCACTTCCTGATGCACTTTCGTTTCTGTTGTGAAATGTTTGACTTCCTTTCTCCTTAGTTTTGATTTTGCAAATGAATTTAAACAAGAACTGTAATAAAACAAAGTAAAAAATAAAACAATAAATTGTATGTTTGCCTACAAAAATGAGTTTTGTGAAACAGAAGTCAGCTGTAGAACTTTGGCTTGCTAAGGATAGCAATTGTAAACTTCTTTTGGTTGATGCAGACGAGAACGAAAACCGCCTGGTATTTCAAGTACCAGATACTCCAGTCTCTTTTTACATTGTTTGTTCTGAGACATTGCACCTGTGGTCAGACAGTGATGATCTGCTTACTCACCTGCAGCCAGTCATTGAGTGGATGACATCATGCAGCAAAAAGCCAATCACGGATGTCCTGAGTCGTGCATACACCTGTGTTAAGCCAAGTGATAATGGCAGCGAGTTTACAGCATCTGTCATCACAGAACTCAAGGTTCTGTGGCCCGATCTCCTCATGGTTCACGACAAGCCTCGGCACCCTCAGAGTCAAGGATCCGTTGCACGGCTGAACTGTGATGTGAAAGATATGTTGATTGCCAGGCTCGGTGATAACAACTCAACAGACTGGCCTATGGGATTGCGATTTGTTCAATTCCAGAAAAACTGCAGTTATCATTCTGGCATCAAGCAGACACCATACAAGGCCGTATTCGGTACTGATGCACAAATTGGATTGCGTACCTCTGTCTTACCAACTGACATTCTGGAATGCATGGTGTCTAAAGAGGATCTCACTGCAGCATATGCTACAACAGACAGTTCATCAAACATGGATGCTGCAGAATCTGATGGACCTGAGCACGACACAGTCAAAGTCACCAATGATGTTCCCGAATCCTTGTCAGGTATGTTCACACTGTTCGTCACTATATGGCACGCTGTTGATGATGATGATGCTAATTTATTTGCTGCACAAGGTTCCACTGCTGCTATACATCGCCTGACAAAAGATTTAAAAGTAATGCAGAAAGCATCTGGTAAATATGGAATTGTTGGAAGTCCAAGGGGAGACAATTTATTTATTTGGGACGTCAAGTTGACAGACTTTCCTACAGATACTAAGCTGGGAAAAGACCTTGAGCTCTTCTCCAAAAAGTATAACCAAGAGGCTGTGATAACACTAGAGATGCAATTCCCGGGAGATTTCCCCTTTTCTCCTCCTTTCATTAGAGTGGTCCGGCCACGCTTCAAGTTTTTGACGGGTCATGTGACCATTGGCGGCAGTATATGTATGGAGATGCTCACCAAGTCTGGATGGAGACCAACCAATGATATTGAGAATATTTTAGTGCAGGTTCGCTGTGAGATTATGAGTGACCCGAATGCTTCACTAGACATCAGCAGTTCCAATCGTGAATACACAAAACAGGAGGCACAAGAAGCGTTTCAGAGAATGGTCACCCGCTACGGGTGGGATAAATAATTAATGACTTCACTGTTGGGAATATGCTAAGTGGGAAGCAGAAATCACTTTTAAAAGAATGGTTACTGTGGGTAGAATGATGGAAAGACATCGTGAAAAGGTTTCAGGTTGGCTAATTTTTCCCGAATATCTCTTATCGTTTTTGCCCGAATTTGAGGATTTGCTCCAGCCCTGTAATTTATGGTTGTATTTATGACAGCGTAAGGATGACTGCTCATGGAACCAAGCTGGATACGACTGGCTGCCTGCCTGTCTGTGGGCCCATTGGGCAATTTCTCGTCCTAGTCGGTGAACCAATGTCGCTATCTTTTTTGCCCGAATTTGAGAATTTGCTCCAGTCCTGGTGGCAGAACACTTATTAATGGTTACTCACTGTGTTTATACTACGGTTACAGGGTATAGTTATTCGCAATAAAAGCAATACTGTCAAATCCTTTATTTTCGTGGACTTCAATTATTCGTGGTTAAATTCGTGGATCGAAAAAGTTATATCATAAATTCATATTATATATATATATATATATATATATATATATATATATATATATATACACACGTGTTACATTTTTGTTGTGTTGTTAAATTTGTTGACAGCACCAATACATGAATTACATGAACAGTAGATCACAAACGAAAGTGATTTCACAGTAAATATTATACTTATTTTTTAACCGTTTTTGAAAGAATGTAAGTGAAAGGGAGTATGTTGTCAGTGGTTTGCTCTTTTTTTGCTGTAGTCTGTGATACATTTTTTGTGTTGTGCTTGCAATAAAGATTTTTAATGTACTGCCTGGTATTGTAAATTTTAAAAGATTGATTTTGAATAACATAGAGAATAACTAGTTAATGACTTGGTGTATCGGATTTACCCTGTGAAGGTAAGAATGGAAAATACTGTGAGGCTTGCTGAATGGAATTTCCTATTCGGCCTGAACAGGATAAAACCGATATCCTATGTCATTAACTTATTATTTTCATGACGCAATCCATCAAACATTAAGAGGAAAAACTATTATTTCTGTTATTTTTACCTACAGTGTACGAAGGAAGGAAATGTTTTATTTAATGACACACTCAACACATTTTATTTACAGTTATATGACGTCAGACATATGGTTAAGAATCATACACTGGGAAAGGAAACTCATTGTCACCACTTCATGAGCTACTCTTTTTCGATTAGCATCAAGGGATCTTTTATATGCACCATCCCACAGACACGATAGTACATACCACGGCCTTTGTTACACCAGTTGTGGAGCACTGGCTGGAACGAGAAATAGCAGAATGGGCCCACCGACGGGAATCGATCCTAGATCGATCGCGCATCAGGCGAGTGCTGTACCACGGAGTTATGTCCCTCCCCTACATTGAACGATGACCCAGAGGTCAGTTAAATTATTTTGTAATGGATCTATGCATATGTCATCAAAAGTCATAATCAGCTAGTATACGTTTATGACTTTGCTTTAATCGGTAAGCATAATTGGCCAATAGAAACGGCGGTTACAGGATAAAATCCAGTATCCAGAGTTGTGCACTAACTGCAGTGACAATCCATATAAATTCACTCCCCCTCCCTCCATGTAGCTGTGAATGCCCTAAAATGGCTGGTTGATGACTATTTTGATAAATATCTTTTGGAGGACTCTATGTACCTAGCATTGGGCTTTGTTTCTATGGGGAGTGGGACGTAACCCAGTGGTAAAGAGCTTGTCTGATGCACGGTTGGTCTGGAATCGATCCCCATAGGTAGGCTATTTCTCATTCCAGCCAGTGCACCACGACTGGTATATTAAAGGCTGTGGTATGTGCTATCCTGTCTATGGGATTGTGCATATAAAAGATCCATTTTTACTAATGGAAATATGTAGTAGGTTTCCCGTCTAAGACTATATGTCAGAATTACCCATTTTGACATCCAATAGCTGATACTAAATCATTGTGCTCTAGTGGTGTTGTTAAACAAAACAAACTTTAACGTTGTTGTTTTTTGTTCCTATGGTCCCCATTAATGGGCCTACTGGGTTAATTCTTGTTTCAACCAGTGCTCCACAACTGGTTTGATGAAGGCTGTGGCATGTACTATTCTGTCAGTTGGATGCTGCATATAAAAGACCACTTCCTGATAAACAAAAAGAGTAGCCCTTTGTGTGATGCATACCACAATTAGGTCACTACGACCTGCTTTTCATGAATTGCAGCACATTAAATGAAATCCCTGTTCATTGAAATAGGATCATCAAACCTTGCATGCAAGTACTATGTGGGATGGTGGTGTGTTACATACTATAACTAGGTCATGGTGATCTACTTTTGACGGCTTATATGTACGTCACCAGTACTCTTGTTCATCATTGTCATCATCATCTTTGTTATCAATGGTTATTATTTTTATTATCGTCTGTCATTTTCATCATCATTATCAATGTTTTGTTCATTTCCGTTTCTTAAAGAATGATTTTCCAATTCCTTGAAGGTATATCAGTATTGGAAATATTAAATTTTTAATGATAAAATGACGATGTGACACTGCAGCTTTAAATGATAACTGTACAGTGTTTCATTATGTTGATTTTTGTTCATTTATTATGATTTAAACGTGCGATATCAACATTACATAAAGCTGGATTCCTGCCCAAATTATATTTTAACTTTTGCTTTTGCTATATGCCCATAAAAAATTAGAAATAAAAATTTAATATACTAGTAGAAAAAAGTATTTTTTATTGGAGAATCTTTAGTAGATGTGTCATTGAATTGGGCGGGTTCATTTAAGATGATCACTCCATAATGTTATGCCAGGGCAAGTTTGCCGTCTTTGTACAACACATCTTTCTCATGGCCATATCAACTAACTTATCAGATTTTGTGGATTGGTCGATTCCAGGGATCGAACTTATGAATTTGTTGCCCACATAAATTTTAACAAATAATGCAGCAGGTGAAATGGCCCACCAACAGCACTTTTGAGCCTACCTACAGCAATTTAAAAAAAAGAGAAGAATTTTGCAGCAAATAAACATGACTGAAAGTTATATAGACAAATTTCAAATGTACTAATGTACAATCCTGGTAGATAAAGTAACATACATTTTGACGTCATGGATGGTTCCCCCTCCCCCCGCCCTCATCTCTTTTCCTTCCTCTTCTTTGAATTCTGTCTCATTTCTTCCCGATCTGACAACTCCTCTTATCTATCAACTTCTTTCACTGTCCACCTCCACTTCCAGGCCTCTAAAAATTGTGAGAGCATTAGATTTGTTCATGCGTTGTTCGCACAAATCTAATTTTGCGTAAACTGTTTTTTATACATGCAAATTTGGAGCACGGGTTATGCAAAAAGGAAATGGGTTATCTGGATTTATTTCTGCATAACCAATAAATGTATCACGCAGATTTTTAATTCTCAGAGGCCTGACTTCCCAGTCCTTGTCTATTCAACCATGACAGGTGCTTGTCTCTTGTAGCTATCCATGCCACACACCTGCCATTTCCCATCAGCTATGGCTTTTGAAGAGTTACTGACAGCAGTAATTGTGATCCAGCGGCACAATAGAGCTGTAGGTGATGCTCCCGACCTACGGCAGTCAATATCTGATTCTCAATGATGCCAATACCGTCGCTAAGTTCGAGCCATGGGGCCTAATTCACTAAACTCTCGCAACTTTGCGATCTCGCAGTGCAATGCTAAAAGACTTGCAAAGAGGATGCTTTGTTGTCTAGCAGAGCCTAAGAGACCTTTGAGAATTAGGCCCCTGGATTTAATCAGATTTGTTACTAGGTGAATAAAGACAGGGATCTAGTCGCTCTGTTTACGTGGCGTACTAGCACTTTACAATGTCAATATTCCAGGAATCTAGTT

Transcript

ctg129-4.1-1

Protein

Gene family

Gene family	Subfamily
Ubiquitin Family	E2\|UBC\|UBC
Ubiquitin Family	UBD\|UBC-like\|UBC
Ubiquitin Family	E2\|UEV\|UEV

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00179	UQ_con	Ubiquitin-conjugating enzyme	Domain	Interproscan
PF15167	DUF4581	Domain of unknown function (DUF4581)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000608	Domain	Ubiquitin-conjugating enzyme E2	Interproscan
IPR001584	Domain	Integrase, catalytic core	Interproscan
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR016135	Homologous_superfamily	Ubiquitin-conjugating enzyme/RWD-like	Interproscan
IPR027892	Family	Maturin	Interproscan
IPR036397	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR050113	Family	Ubiquitin-conjugating enzyme	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24067	UBIQUITIN-CONJUGATING ENZYME E2	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000209	Biological Process	protein polyubiquitination	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0006281	Biological Process	DNA repair	Interproscan
GO:0015074	Biological Process	DNA integration	Interproscan
GO:0016574	Biological Process	obsolete histone ubiquitination	Interproscan
GO:0043161	Biological Process	proteasome-mediated ubiquitin-dependent protein catabolic process	Interproscan
GO:0061631	Molecular Function	ubiquitin conjugating enzyme activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for ctg129-4.1-1 global RNA-seq network