Gene detail

Detailed information of ctg128-4.6-1 in Gigantopelta aegis Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
ctg128-4.6-1	CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR SUBUNIT 4-RELATED	chr8	52276268	52287610	+

Gene Structure

More details in Jbrowse Sequence

CDS

ctg128-4.6-1

TACTACTTCCGGAATATTATTGGCACTAATTTTAGTTGTTATTTTTTGTTTTTGTTTCTTTGCAATAAGATCCAAATATATATTTGTCAAAATGCAGGAATTAGTGGCACCAGTTAATCACATTAAGTTTGATATTGAACTCGCTTTAGAACAACAGTTGGGTTCACAGCCATTGCCCTTCCCAGGAATGGACAAATCTGGTGCTGCAACCTGCACATTCTATTTACATTCGATATGCAACAAGGGCTCAGCGTGTCCATTCCGACACGTGCGTGGGGACAGAACTGTTGTGTGTAAACATTGGCTCAGAGGCTTGTGTAAGAAGGGAGATGACTGTGAATTCTTGCACGAGTATGACATGTCAAAGATGCCCGAATGTTACTTCTATTCCAAATTCGGTATATGCAGTAATAAGGAATGTCCATTTTTGCATATTGATCCTGAAAAAAAAATTAAAGACTGTCCATGGTATGACAGGGGCTTTTGTAGACATGGCCCAAACTGCAAAAACCGACATGTGCGACGAGTTATCTGTCAGTGCTTTCTTAATGGCTTCTGTATAGAAGGGCCTGACTGTGCATTTAAACATCCCAAGCATGATCTTCCAACACCCGATCCATTGGAACGTCTACGGAAAGCTTCCATTGTTTGTCACTTCTGTGGAGAATCAGGTCACAAGGCCATTCATTGTCATAAGATGCCGGCCGATATGAAAGCAGAAACACAAGAGCACAACCGAGACACATGGACATCCAGACTTATTGATGATGACCGGCGTCCCATTCAAGAAGTTACCTGTTATAAGTGTGGAGAAAAAGGCCACTATGCCAACAAATGTACAAAGGGTCATCTTGCTTTCCTTAGTGCCGGATTAGTGAAATGATACAGACTGGATGAATGTTTTGTACACCCAGACAATGAGTTATGTCGATGGTCATGACTGTTTGCTTTGGTGTCATTTTGTCAATATCCATTTGTTCACAAACAATGTTGAAGGCCAGCTACAGATCACTGATCAGTAAAGAAACAACAGTATTGCTTTGAGGCCTTTACAAAGGGTGGAGTGAAAGTCTTTCTACAGCATTTGTTACATGGAATACTGGATACTGAAAGCTAATAAGCTGAAGTGAAGAGTAGTTGGTTTGTCTGTATCAAAATTATGCATTTATGGAAGAGAATGGTTTCATTTAACATTTGACTGTCGACTGATTTGGTGTTTAATATGCTCAGGACTAAATGAGCAAAGTTAAGGGTTTGTGATGCCAAAATGTATTCTGTAGTTTTGTTGCCAAGCAGTGAATTTTGTGAGAAAAGTATAACTTCAAACAGATTCTGTTGTATTGACACTATCCAGTGAATACTATAGAGAAAATATATCTTCAAACAGATTCTGTTATATTGACACTATCCAGTGAATACTATAGAGAAAATATATCTTCAAACAGATTCTGTTATATTGACACTATCCAGTGAATACTGTAAGAGAAAGTATAATTTCAAACGGATTCTGTTGTATTGACACTATCCAGTGAATACTGTGAGAGAAAGTATATCTTCAAACAGATTCTGTTGTTTTGATTATATCCAATGCATGCTGTGAGAAAGAATAACTTTGAATACAAACACTTTTCATGGTTTATTGCTAACATCTGTGAAAAAAAATAAACAGCACACTAAATATAGCATCTCAGGGTAGTTAATATTATTAAAGTCCCAATCCCATTTTAGTATAATAATTCTAAATTGTCCATTCCTGTTCTTTCCGGACCAGACAACTAGCTATCCAGAGGCCGGGCCCGGGATAGACATGCACGAAACGTTAGTGGTATAGGGGCATGTTAAAAGGGTACTCTCTCCCTCTCAGGGTAGTCTAATGTAAGGTCTGTTTTGTCAGAGGGGATTTAAAGTCTTGATTCATTTGTGAAGATTTTATTCATTTGTTATGTGATTCAGTCTGTCATTCGGTATACCAATTGAAATATAATAAATGTTTGCATTTGTTATGTGAATAAAACTGATTCACTTTCTTGTTTTTCTTTAGTACATTTAATTGTGCATGCAGTCATTATATATTTATTATTTTCAGAAACTTGAATGTTGTGCATTATAAAATCCTGATTTATTATTATTCCACTACCAGTCCAACTGGAGGGGGATTATTGGTTTTGTCTGTCTGTTCGTCCATCTGCCTGTCCATTTCTCCCATATATAGTTGGGGGGGTTTTATTTCAGAATTCCTCAAGATATTTTGTGCATAGCTTTACAGATCAACTTTGACTTTCATTGGAATTGAGGGTGGGATGTAGCCCAGTGGTAAAGTGCTCACTTGATGCTCTCAGTCTGAGATTGATCCCCGTCGGTGGGCCCATTGGGCTATTTCTCGTTCCAGCCAGTGCACTATGACTGGTAAATACATCAACGGCTGTGGTATATGCTATCCTGTCTGTGGAATGGTGCATATAAAAGATCCCTTTCTACTAATGGGAAAAATGTAGCAGGTTTTCTCTCTAAGACTATATGTCAAAATGACCAAATGTTTGACATCCAACAGCTGATGATTGATGAATCAATGTGATCTAGTGGTGCCGTTAAACAAAACCCCTTTTTTTGTGATGGGAATTGGTTCATTTTTGACAGTTTACAGGGGACACTATTTTTAAAATGTTATGTACAACTAGAAGTCCGTTCACAATGTTTTTAGCTTAGGTAACCTATTATTAGGTTACATTTACATACCCAGTGAGTTACAATCGGCCTACAATCAAATGTCAAAAACTCAGTCCAGAATAGTATAGAATGCATGCATTTTTTCTTAATATTAGAATAAAGTTCTAGTGACCCTTGAGCTTACAAAGTTTAGTTTCTGAATATTAATTCACCATATAAATGGTGGTGCACATGGATCTAAAGTTGCATAACAGACACAAAAGAACAATTTGTTTAAAATATTGTACACTGGTTACAGCCCCTAAACATAAAACATGAACATGTGTGGGGCCTGATGGGGGATATTTACATGTATTGATTTAGCAGTACTCTTGGGATGCTTGTTTTTATTTAATTCTTCTTCAGCTATGGGACTTTAACATAAGATGACCAACATTAGTAAGTGTTTTGTTTGTATTTATAATTTGTTTTTGATTGTTGCTTTTTGTGTTAATAAATACTTGATTTTAAAAAAATAACCATGACTGTACATATTTTATTTATGAATAAAAAATTGCACATGGTTTGTTAAAGATACAAATGCCCTTCCCTCCCAACTCCATAACGTTTTGATATGCATTTGGTGATCCGCTT

Transcript

ctg128-4.6-1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00098	zf-CCHC	Zinc knuckle	Domain	Interproscan
PF14608	zf-CCCH_2	RNA-binding, Nab2-type zinc finger	Domain	Interproscan
PF15663	zf-CCCH_3	Zinc-finger containing family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000571	Domain	Zinc finger, CCCH-type	Interproscan
IPR001878	Domain	Zinc finger, CCHC-type	Interproscan
IPR036855	Homologous_superfamily	Zinc finger, CCCH-type superfamily	Interproscan
IPR036875	Homologous_superfamily	Zinc finger, CCHC-type superfamily	Interproscan
IPR041686	Domain	Zinc-finger CCCH domain	Interproscan
IPR045348	Family	CPSF complex subunit CPSF4-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23102	CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR SUBUNIT 4-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0046872	Molecular Function	metal ion binding	Interproscan
GO:0098789	Biological Process	obsolete pre-mRNA cleavage required for polyadenylation	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for ctg128-4.6-1 global RNA-seq network