Gene detail

Detailed information of ctg1181-1.0-1 in Gigantopelta aegis Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
ctg1181-1.0-1	RING FINGER AND SWIM DOMAIN-CONTAINING PROTEIN 2	chr6	71516323	71545999	+

Gene Structure

More details in Jbrowse Sequence

CDS

ctg1181-1.0-1

GATGACTTTTTAACTAATGATGGTGGCACTGGTACAGCAAACACGGAAAAATTAGATGATTATAGAAAAAGAGTATCAAGAATAAATCCACCATGGAAACAAGATTTAACAGAGAAAAAGAAATCTGGCCCAGTGTCTCCAAGGAATGTAAAAACATCATCTTCTGCAGTGGCACACTCACAGATTCCACTGAGTGTAGCAAGTGCTTTAAGACGACGTCACACAAACCCTGGAGCAGAATCTCCATTCAAACAGCAAGTTGTCAACCAGCCTGCTCCAACTGGCATACCTCGAAAACGCATATCACCGTCAAACTCAACATTTTTGTTACTTGTTGCAATGAAATGTAAGACTAGTAAATACCCAGTCATAACGTGGTTTATTCTTTTGAAGTTCCGACAACAAGTGGGAGCCGTACAAAGTAGTCACCCAAGTCGACGCAGCCAGACCACAAATGATGACAGCGACTTGACAAAGAAACGCATCGAACGGGTTCAGCGTGCACGACTTTACTTGCTACAGCAAACTGGGCCAAATTCTTTCCTGATCGGAGGTGATTCTCCCGATCACAAGTTCAGGGTTATTATTGGTCCACAGACATGCAGCTGTGGTCGCTTCCCATTCTGTGTTCATATTCTGTTTGTGATGTTACGAGTCTTCCAAGTGAGCGAGTTGGACCCCCGTTTGTGGAACAAGACTCTAAAGAATTACGAGGTTGAAAGTCTTTTCCGTATTTACCATGACAAACGGTCTTCCCGAATACACAGTCGTAAACAAGAGAAGAGTGTGAAAGCGAAACCTATTGTTGAAGAAAATCATGTCAGCGATTCCAGCGAGAACACGAGTCTGCCATCTGAGAGTGAAACTGGGAGCACAAGAGAGGAGGACGACACATGTCCGATCTGTCTTCTTGAGATGCTGGAAGGAGAGAGTTTAATCAAGTGTGAAAACGGCTGCCAGAACCGGCTTCATCACCACTGTATTGCAATCTGGTTTGAAGAATGTCGGCGACAGAATGACCCACTCAACTGTCCTCTGTGTCGTACCCGTTGGAAATCAACCACTGTCGAAATCAAAAGTTGCCAGAATGATAACGAAGACACTCCAGAGGTTCCGCCAAACACCCGTGCCCCCTCCCCCCAGGGCATACAAGTCGCTGAGGGTCGACTTCCACATGCAGAGTCTATCCCACAAGAGAACCAAGCAGTTGCCGAGCCCTGGATTGAGGTTTTAGGTGAAGACCTTGTGTGCTGTTTGTTTTCCCGAAACTGGTCAATCCGAGAGATGGGCGTAAAACACCTAAGTAAGGAGGTGGTCGGCACATTGCTGCGGGGGATGGGCGAGGGGCGGTCAGGGGTGATCGTGTCGCCGACGCGCCAGGCTGCGACGAGACAGATGCTGGACACGTGTTCCACCGTGCTTGCCTTCATGTGTGCTGACCCCGTGTACAGAGTGTTTGTGGCCAGTCTTAGAGCGCTAAGACAGATGTTGGCTTACACTCCATGTCGAGATAAACAGCAGCAAAATCGGCTTCAGACAAGGATTAAACCCATCGTAGACGCAATAATACTCAAGTGTACTGATGGAAACAAGAGGACCAGTCAGCTGTCTCTGTCCACTCTCGTAGAACTTGCTAAAGGCCAAGATGGAGAACTCGCTGTCGGCAAAGAAATCGTCAATCCAGGATCAGCTGGATTGGATGGACTGTATTATGTGCTCAAGTGTGTGACAGAACAGTACAACGTTGACCAAGTTCAGTGGCAATGGTTACTAGGGAGACTTTATGTCATAGACCGGTTTCTAGAAGAATTTCCTTCCGATTTTCTACCCCAGGAAGAGGAGCATTCAGGTGCAGCAGCTGCCGAGAATGGTGTCCCTGACGCTGCTGGGGCAGCCGCGCCGTGTGAGAACGGTGTTGACGAAGACTCTCACAATTACCACCGTCTGTTGGCCGTCGCACACTTCTCGGTGAAGGCCGTCTGCAATGCTCACACAAGAATCGCTCGAATGGCCCGAAGAGTTTTCCTTCTTTCTGCAAAGCTTGGTGCTCATCTTGAAGGTATAGTTAAAGAGATGGAGGATCTCCTGTCAACAATAGATTCCGCGTCGGTGATCTCCGTCAAAAGAAAACTGGCAAGGATTGTAAGTGATTTTCACATATCGGAAAAAATCGTCCAGGAATTGCAGCACGGTACTGGAAAATCGCGTCGTCATGTTCACCGAGTGTCGTCTCCTTTCGATACACCAAAAGATTCTCCTGTCTCAACACCACGTTGCACTTCTCCCGTGACCGTGTTGTCGGAGGACGCACCCAGTGATGTGTGTAGCTCTCAGGGAGGGAAGGGCATTCCCTGCTGCCCTCCCAACACTCCGATACACAGAAAACGGAAGAAAAACAGACGTTCGATTCCTCGAAGAATCTCGAAAGAAAAAAATTTATCAACTCCTCCTACCTCACCGGGAAAGATAGAAGAAAATGGTTTCCAAAACGACGGCGAAGAAGAAGAAGAAAACACTGTAGATGATTCCATGTCGGTAAACATCGGCTCCTCCCTTCCATTTATTCCTTTAAATTTGGATCCTGAGATTCAGCCGGAAAGAATTTCAGAAATGTTGAACAATGTGAGTCTGTGCGAACCAGCAGCAGTGGAGGCTGGTAAAACTCAGGAACCAGAAGACCACTTTTTGATTGTCGATCAGGAAAACCCCGGTTCACCAGATGGCGAGAGTTGTTCCCCGGCCACCGCGAGTCATTCACCGGCCACCGCCTGTTGCTGTTTGGACAAGTCTCAGTGTGATGACACGTCCATACATTCGGGGACCGCAGCAGCTCCCAACACGCCCGAACACGCCCAGTGTTTCCACACGGCCGACCAGGAGACGATGAGCAGTGATGATCTCCTGGATCTGAACAGCGTCACCTCTCCACTTCAGGCCTGCGAACAGGCCGTGTCTTTCAGGTCGGAGGTCACACAGTCGCCAAAGATTTCACCTAGTCACACTGCAGACCAAGCTGCAATGCGAGAGCCAGAGGAATGTCACTGCAAGGAGGAGGTTGAGATCGAGGAGGCGGTTGCCATGGCGAAGGCGATGGAGATGTCGTACGTGCAGGCTCCCTGTCCTGTGGTTCCAGGTCTGACTCCTACCAGCAAGGAGGAAGTGATCACCATCCACATCCAGCCAGAGGACGACTATTTGAATGGCCCAACTGTGGATCATCCGTCCATCTACTACGAGGGGATTCACTGGCAGAAAGGACCCTTGCTTGGAACTGGGGCTTACAGCACGTGCTATCAAGCGAGAGATGTGGCAACTGGAGTTCTTATGGCTGTCAAGCAGGTAACGGTTCCACACCACCATTAA

Transcript

ctg1181-1.0-1

Protein

Gene family

Gene family	Subfamily
Ubiquitin Family	E3\|E3 activity RING\|PHD

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13639	zf-RING_2	Ring finger domain	Domain	Interproscan
PF21040	CEP104-like_TOG	Centrosomal protein CEP104-like, TOG domain	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001841	Domain	Zinc finger, RING-type	Interproscan
IPR007527	Domain	Zinc finger, SWIM-type	Interproscan
IPR011989	Homologous_superfamily	Armadillo-like helical	Interproscan
IPR013083	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR016024	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR017441	Binding_site	Protein kinase, ATP binding site	Interproscan
IPR039903	Family	E3 ubiquitin-protein ligase Zswim2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21540	RING FINGER AND SWIM DOMAIN-CONTAINING PROTEIN 2	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0061630	Molecular Function	ubiquitin protein ligase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for ctg1181-1.0-1 global RNA-seq network