Gene detail

Detailed information of ctg118-11.4-1 in Gigantopelta aegis Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
ctg118-11.4-1	STRUCTURE-SPECIFIC ENDONUCLEASE SUBUNIT SLX1	chr3	48059519	48070103	-

Gene Structure

More details in Jbrowse Sequence

CDS

ctg118-11.4-1

AATAGATTAGACCTTTGTCTGCTCAACGGTTTTTTCTCAGACGCTGTGCGTTTTTAAGAAATATGAAAAATACAAACACCAGGATTACCAAAAAACACTTCAGCATTTAGTTCTGTTCACCACAAAGGCTGCGCATTGTGTAGCTCAACAGTCATGAAGAATGGTTCACGAAATAGAAGACTTCTACGGAGTGTATCTCCTTTACAATCTCAACCCAAAGTATAAAGGTCGCACATATATTGGTTACACTGTCGACCCAAACCGGCGAATAAAGCAGCACAATACAGGGGCCCAGGCTGGGGGAGCATGGCGGACAGACGGCAAAGGGCCATGTTTCTGGCATGAGTTCTTTTGTAGATGTGTTTTCTTACACAAGTCTCAACAAAATCAGTCATTGTTTGAGTGGGCTTGGCAGCATCCTGATAAGTCACGTCGTTTGAGACACTTGTCTAAGAAGTCAAAGAAGGAGAGTCAGTTTGAATTCCGCTTTCGTATCGTATCACAAATGCTGAGAACTGGACCTTGGAACAGACTTCCTCTGAATATACGATGGCTGAAACAGGAATTCAAGCTGGATTTCCCACCTGAAGCTAGCCCACCAATACACATGCCAATAGTTTATGGTCCTGTGAAGAGCAAACGGATTGGAAAGAAAGGCAAGGGAAGAGAAGAAAAAGCTCCCAATGAATCAGAAAGTGATGAAATGGATCTGTGCCGTATTACTTTGAAGCATTCCCTGTGTGAAATTTGCTACAGCAGATTCAAGCCCGAAGACAGCAAAGTGTCCTGCTTCCATCCCAACTGTTCCATGGTGAGCCACATGCTGTGTCTGTCGCGGAGATTCATCACTGAGAAAGACGAGGTCATACCAATAGACGGACCATGTCCAAAGTGCAAGCAGATTCTTCTCTGGGGTGACGTCATCAGACATAAGAATGGTTGCTACCAGAACCTTAATGAATCCACGGGACAGAGTGATGTCACACCAGGCACAGACAGTGACAACTGGGATTAACTTTACCAGTGTTCACAATGGGAGTTGATTATTGACTACCTGGCAGGGATGTGTATTGATCAACTCCCAAGTATTGTCAACTTTCTACAAACAGCTGTTGCACATGTAGTTATACTGACGTCCTTGAGTTGCAGCTTAATGATTTCTGGCTCACATCTTGAACTGTTTACTTAGCCATCCTTTTGCAGAATATATTTATGTGTTATATGTTTGTGGTGTTTGAAGCAACATTTATACATATAAGATACCTTAAATTGTAAATGATGTAAATTTACTTAATAACAGATGCAAAAGTCCAGTGAGACTGAGTTGCCAATATAGATATCAGGGGTGGGAATTCTCCTCGGATCAGCTGTTTTCCTCTCATGGAACATTGTGTTTCCTTTCCTCCAAAATTTGTCAGATGGCACAGATTTTAACCTAGGATTTCAAGAATTTACGGGACCCTTCTAGATTGACTCTTTTTTACAGTTCACCAATTCCCACCCCTGAGGTATTAAAGAAGTTTGTTTGGTTTGTTTAGTGACACCACTAGAGCACATTGATTTATAAATCATTGGCTATTGGATGTCGAACATTTGGTAATTTTTACACAGTCTTAGAGAGGAAACCTGCTACATTTTTTTTTCATTAGTAGCAAGGGATCTTTTATATGCACCATCCCGTATACAGTATAGCACATACCATGGCCTTTGATATTTACCAGTCTTGGTGCACTAGCTGGAACGAGAATTAGCCCAATGGGTCCACTGACAGGAATTGATGCCAAACTGACCACGCATCAAGAAAGCACTTTACCACTGGGCTAGGATATGATATTGGGTATTGTCAAGTCTTAATTTGCATGACGTTAATTCATCTTTAATAATGAGGTGCTGGGTTTGCATTACTGTAATACTCCATTTCAAAATTGATTTTAATGACTCCAGATAAAAGCATGAAAATATATTTACAAAATGAACTGAACATTTTTAACATATAGTGCATCTGTGATATTGCAGTGCATGAATTTACTTTGTGTAGATAAATTTTATTTAAAC

Transcript

ctg118-11.4-1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01541	GIY-YIG	GIY-YIG catalytic domain	Domain	Interproscan
PF21202	SLX1_C	Structure-specific endonuclease subunit SLX1, C-terminal	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000305	Domain	GIY-YIG endonuclease	Interproscan
IPR013083	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR027520	Family	Structure-specific endonuclease subunit Slx1	Interproscan
IPR035901	Homologous_superfamily	GIY-YIG endonuclease superfamily	Interproscan
IPR048749	Domain	Structure-specific endonuclease subunit SLX1, C-terminal domain	Interproscan
IPR050381	Family	SLX1 structure-specific endonuclease	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR20208	STRUCTURE-SPECIFIC ENDONUCLEASE SUBUNIT SLX1	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000724	Biological Process	double-strand break repair via homologous recombination	Interproscan
GO:0006281	Biological Process	DNA repair	Interproscan
GO:0008821	Molecular Function	crossover junction DNA endonuclease activity	Interproscan
GO:0017108	Molecular Function	5'-flap endonuclease activity	Interproscan
GO:0033557	Cellular Component	Slx1-Slx4 complex	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for ctg118-11.4-1 global RNA-seq network