Gene detail

Detailed information of ctg111-7.5-1 in Gigantopelta aegis Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
ctg111-7.5-1	FAT ATYPICAL CADHERIN-RELATED	chr9	3115576	3145325	-

Gene Structure

More details in Jbrowse Sequence

CDS

ctg111-7.5-1

ATGCCACGTCTCGGTGAACCGCAGAGAAACAATGCCATCGGCCGACTAGACGCAGGCGAATCCAGAACGGCCGTTGCCAGGGCATTCCATGTGTCCCCAAGCACCATCTCCAGACTGTGGGACCGTTACCAGCAACATGGATCAACACGTGACCTCCCTAGATCCGGTCGACCACGGGTCACTACCCCCGGGCAGGACCGCTACATCCGGGTACGCCACCTTCGGGAACGATTGACTACTGCCACCTCCACAGCCGCAGCAATACCAGGTTTGCGCAGGATATCCGACCAGACCGTACGGAACCGCCTACGTGAGGTAGGAATTCGTGCCAGACGTCCAGTTCGAGGTGTCATCTTAACACCACAACACCGTCGACTCAGACTGCAGTGGTGCCAGATTCATCGACAATGGCCTCAACTGCGATGGAGACAGGTGTGGTTCAGTGACGAGTCCCGATTTCTGCTCCGACGTCATGATGGAAGATGTCGCGTGTATAGGCGTCGTGGTGAACGTTATGCGGCAAACTGCGTGCAGGAAGTGGACAGATTCGGCGGGGGTAGTGTCATGGTGTGGGCAGCCATCTCACACACTGGCAGAACTGACCTGGTCCACGTGCAGGGCAACCTGAATGCACAGGGCTACATTGACCAGATCCTCCGGCCACACATCGTTCCAGTTATGGCCAACGCCAACGCAGTGTTCCAACATGACAACGCCAGGCCTCACACAGCACGTCTCACAACGGCTTTCCTACAGAACAACAACATTAATGTCCTTCCTTGGCCATCGATATCACCGGATTTGAACCCAATTGAGCATCTATGGGACGAGTTGGACCGACGCCTCCGACAGCGACAACCACAGCCCCAGACCCTGCCCGAGCTGGCAGTAGCCTTGCAGGCCGAGTGGGCCACCATCCCCCGGGACGTCATCCGAAAATGGACTGGACGAATTATTGACGACAAGGACTGGTACTATTTTATTGACAACGGAGTGGACATCAACACGAGGAACTGGTTAATCATTGCCATCAAGGCCTGCCAAGGCGCGGAGATGCTGTTCTCTGAAAAACACGCAGTTGCTAAATACGTATATGTTCGCCTCGGGGACCAGTCCAAGACACCCGAGCAGCATTACACTTTCGCCAATGTTCACTGCACGTCTACAGGGTGTTCGTTTGGCGCCAAGAAAACAGGAAGTCTGCTGAATTGCGACAAATACATCCCTTTCTGGATACGCTGGGATAATAAAGGTCAATTTGAAGTTGGACTTGGCCTGACAGTCGGGGGCGGTACTTCATTACTCAAAATGGATTATGGAGAAGTGTTTGACCTGCGAATGGTCAAGGCTTCTATGACAACAAGTGATAAGGGAATTTGGCTCTTCCTCATTGATGAGCCTCCTTCGTTCACGTTTCCATCCCAGTTCACAAACTCCAGCGTGGAAATACAGGAAGACATAGCCATTGGACAAGAAGTCACCGCTCTCAATGCGACTGACCCGGAAGGAGATACATTGACCTTTACGGTTATTGGCGAGTACGCCGATGTGTTCGTCTGTGATGGATCTTCACTCAAAACAAACCAAAGTCTCGATTATGAAACACAGCGAAGTTACTATCTCACAATAGAGGTTAAAGATAAACGAAACACGGTAGTGGCGCCATTGGCTGTTTACATTGTTAACGTCATCGATGAAACTCCTTCCATTGTACGATTAGACTATCTCTTTGTGCCAGAAGAGCTCCTTAACGGGACAACACTTTCGGGATTTTACCAGACAACAGACAGAGATGCAAACGATACATTGACATACAGCATCAGTGGAGCAGATGCCAGTTTCTTCTCTATCGACTCCTCTACGCTGGTAGTGGCGCGGAGGGTGGACAGGGACGGCCCGACTGGCAAGAAGGAGTTGAAGGTAACAATCAACGTCGAGGACTCGGGCACTTTGAAAGCAGTTCAAGATTTTGTCATCACCGTTCTCGACGTGAACGACAACCCGCCATTGTTCTCACAGCCTGCCTACGTCACAGAAGTAAAAGAAAACGCTGGAAATGGACTCAAAATTCTTCAGCTGAACTGCACGGATATTGACGATGACGTCAACGGGGACACCGTGCTATCCATCGCCAGCGGTGACGACACAAGTCCCAAGTTCTCGCTCACTGGACAAGACTTGTATGTTGATGCCAATGACGTTGACTACGAGGCGCTTAACGCAAGCGAGTTTAGGTATGTCTTGACGATATACTGCGTCGACCAACCACAACAGGGAGATGCGTATACAGCATCCACGATAGTTACAGTTAAGATTCTTCCAGATAATGAGCATTCTCCTGTCTGGGTGAGTCCTGTAACAGACGCGACTGAAGCATTTCCGGAAACGACTTACGACGAGGACGTGACTTCATCTACAATAATACAAACGTTCTCGGCATCGGACGATGACATCGGAGAAGACGGGTCATTGACCTATAAAATAGTCTCAGTAACATCTGACGATGGTTCCTCTGTTAGCGACCACTTCTCTCTTGGAAGTACGAACCCAGTTCTACGTACAGTCAAACTATTGGATAGAGACGCTGCCACCGGGGGATTTAAATACTTTAATATCGTTGTCATGGCAACAGATAATGGCACTCCTCAGAAGAGTGTCATTGGGACATTAAGGGTTAACCTGAATAACGTGAACGATAACCCACCTCAGTTTGACAAATCTATTTACAATGTTACGCTTCCGGAAAACACGCCCACCGGTGACTTGGTTACCATGGTAACTGTTACTGACAATGATGGGGATACCGTTACTATGTCTGTGGTTGGAGAACGCGCAGACATGTTCACTATTTCCGGTGATCGTGTTGTACTAGCTAAACCACTGGACTACGAAGTTACACGCTGTTTGACGACAATCATCAGCCTTCATGACGGCAACCACACAGTGAGCGCCATTCTATCAGTAGAGGTGACGAACGTGGTAGACGAGTCTCCACAAATCACAGTCAACAACCCCCTCGTCATGTTTGAGGAACTGCCTATAGGAACAGTCATCGGTGAAGTGTTCACAGTTACCGACGATGATGAAGATGACGTTCTAACATATTCCCTGAAAGGCGCAGACTCACAGTATTTTACCATCAACTCGACGACGGGCGGCCTGTCAATCAAACAGTTGTTTGACGCCGACGGGACGGACGGACGCTCCAGTTTAACTCAGCTCACTCTGGTTGTGCAGGACTCGGCGGGTCTGACCGACAGCGAGGACCTCGTCTTCTCGATAACCGACGTCAACGACAACTCCCCGCAGTGCTCACAAGACGTCTACACCGTCAATGTGACAGAAAATACTCCAGCTGGCGATCTGGTATTGGAACTGAACTGCTCTGATGCTGACCCAGGAAGCAACGGAAACGTGACGTTGTCTGTAGCTGGCGGGAACTCCGGCGGCTGGTTTACAGTTGGAGGAATGGGTCTGTACACAGATGGCGTGATGGTCGACTACGAAGAGTCATCACCGAGTCACACGATCGTCTTGACTGTAATGGCCAGAGATTCTCCAGACAATGGACCAGCGAGAACAGACGTAGCAGTGGTCATTGTTCAGATTCTTCCAGTCAATGAATTTGCACCGGAGTGGATTGCACCACAGCCTGATGCGTCCAGTGTTTTCCCCGCCGTGGACGTCACAGAGGATGTTGCTGTAGGAAGCCCTGTTGAGACGCACAGAGCCGACGACAGCGACACTGGTGTTGATGGTTCCGTGACGTATTCCATCGATAATATCGTCTCAGATAAAGGGACATCACATCCCAGCCATTTTGCTATCCACTCCCAGTCAGGTCTTCTGTTCACAAACGCCATTTTAGACGCAGATGACATCACAGGCGGTGTCGCTTACTACGACATCACCATAGTTGCTGCTGATCACGGAACCATGCCAAAGAGTGTGACGGGAACTGTGAGGGTGACTCTAAGCAACGTGAACGACAACCCGCCAGTGTTTGTCAACCACGAAGGCATTGTAGCAGTAGCAGAGAATGTTTCTATTGGTGGCGATGTACACGTCTTCAACGTCAAAGACTACGACGGCGACGCAGTGACATTGACACTAGCTGACGGTGACGTCGATTACTTCACGGTGTCTGGTACAACACTTCGCACGGCCAAGGAACTGGACTTTGAGCAGCAACCCTTTCACATACTTGTTGTACAAGCAAGTGATGGACTATTTGAAACGAATGTAACTCTAGTAGTCAACGTAACAGACGTTGTAGATGAAAATCCCGCCATTACGTTATACGCAGGCGCAGCTGTAACTGAGGAACAACCAATAGGATCTGCTGTCTGTAATGTGTTTAACATCACCGACAGAGATAAGGACGATTCGTTCACATACACACTTACAGGAAGTCAAGCTACACTGGTAACCATAGACGGACAGACTGGCATGCTGTCTGTCGCTGGGCGCATTGACCGAGATGGAGCCAGCGGCGTAGCGTTTCTCAACCAGCTTCAGCTCACAGTCACCGACAGCGCCGGCCTCTCCGACAGCATCAGCCTCAACATCACCGTCAACGACGCCAACGACAACTCGCCCACATTTAGCAGCTTGACGTACCTGACCAACGTCACAGAGGGCGCCACTCAGTCTGTTATACTCCAGTTAACGTGTACAGACGCCGATTCGGGATCCAATGGACAGCTAGAATTATCGATATCAGATGGGGACGATACTGACCCGAAATATTCAGTCAGCGGGTTTGAGCTGATAGCTCACTCTACGAAGATAGACTACGAATCCCTGGAGAATCAGGAATACAAGTACACCCTGACTGTGATGGCTGTGGACAAACCTCAGTCAGATACAGCAAAGACAGGACTCACCTTCATCACTGTACAGAAAATAGAGTTACAGACAGGATACTACCTTGAGGCACACCCATCTCCTGTGGGTGAATGTCGGACAAAGTCGACCCCACCCGGACTTTAA

Transcript

ctg111-7.5-1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00028	Cadherin	Cadherin domain	Domain	Interproscan
PF01498	HTH_Tnp_Tc3_2	Transposase	Family	Interproscan
PF13358	DDE_3	DDE superfamily endonuclease	Domain	Interproscan
PF13518	HTH_28	Helix-turn-helix domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002126	Domain	Cadherin-like	Interproscan
IPR002492	Domain	Transposase, Tc1-like	Interproscan
IPR009057	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan
IPR015919	Homologous_superfamily	Cadherin-like superfamily	Interproscan
IPR020894	Conserved_site	Cadherin conserved site	Interproscan
IPR036397	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR038717	Domain	Tc1-like transposase, DDE domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24026	FAT ATYPICAL CADHERIN-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0005509	Molecular Function	calcium ion binding	Interproscan
GO:0005886	Cellular Component	plasma membrane	Interproscan
GO:0006313	Biological Process	DNA transposition	Interproscan
GO:0007155	Biological Process	cell adhesion	Interproscan
GO:0007156	Biological Process	homophilic cell adhesion via plasma membrane adhesion molecules	Interproscan
GO:0015074	Biological Process	DNA integration	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for ctg111-7.5-1 global RNA-seq network