Gene detail

Detailed information of ctg1000-1.5-1 in Gigantopelta aegis Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
ctg1000-1.5-1	SOLEUCYL-TRNA SYNTHETASE	chr3	12677461	12699908	+

Gene Structure

More details in Jbrowse Sequence

CDS

ctg1000-1.5-1

ATGGTCTCAGTTGCACTGCTCTGTGCAAATGTGAGGATTGCTGCAATGCGGTGGAGTTCAAAGTTGATGATGAAGACAATTTTTTCTAAGATAGTGGTATTCAACATACTTTGTAAATGTTTTGATCTTGACCTTACTGTGACATTAGTTGTGCGATTGTGTAAGATTGAGGAGAATGGTGTGAAATTTGCCTACAGTGACACCAAGATGGAAACGTCGGAGAATTACATGGACCGTTGGATTCTCTCATTTTCACAGTCGTTGATCAAGTTTGTGAAAAAAGAAATGGCAGCTTACCATCTGTACACGGTTGTTCCAAGATTGGTGAAATTTGTCGACCAGCTCACAAACTGGTATGTGCGTATGAACAGAAAGAGACTGAAGGGTGATGGCGGCCCATCCGACTGCCTCCAAGCTCTGGAATCTCTCTTCAGTGTTATTTTCAACATGATAAAAGTTATGTCTCCTTTCACTCCACACCTGACTGAGTACATGTATCAGAACATGCGCAACTTGCTGGAGCCGGTGTCTGGCGAGAAGAGCGACACTCGCAGCGTGCATTTCCTCATGCTGCCTCACCCCAGATTACTCAAGTGTTTAGTGTTTTTCCAGTCTCCTTTCACTCCACACCTGACTGAGTACATGTACCAGAACATGCGCAACTTGCTGGAGCCGGTGTCTGGCGAGAAGAGCGACACTCGCAGCGTGCATTTCCTCATGCTGCCTCACCCCAGGGAGTCTCTGATTGATGTGAAAATTGAGAATGCTGTGTCTGTGATGCAGACAGTGATTGAATTGGGTCGTGTTGTTAGGGACAGAAAGACGTTACCACTAAAGTATCCGCTGAAGGAAGTGGTGGTCATTCACCAAGACCCCAGGGCCCTGGAGGACGTCAGATCTCTGAAGAAATACATACTGGAAGAGCTGAATGTGCGTGAGTTGACGACGACGACGGACAAGGAGAAGTATGGCATCCACCTGAAGGCTGAACCGGATCACAAAGTACTCGGCGTCAAGCTCAAAGGAGACTTCAAGCCGACGATGGCCGCCATCCAGGCGTTGACGGACGCGCAGCTGGTGGCGTTCAAGAAGACCGGAGAGATCGTGCTGCTTATTTTGCTGGATGTGACCCCAGACCAGTTGATGTTGGATGAAGGAATAGCCCGCGAGGTTATCAATCGCATACAGAAACTACGAAAAAAGGCAGCACTGGTTCCGTCACATGACATAACGGCGTACTACAAGGCCTCTCCCGATCTGTCTCGCATCATCGACGAGTTCACAGAGTTTATCTGTAGCACCATCAAACAGCCTCTTTCCAGATACCCCGTGAGGCCACACAGTAAAGTGATCATACAAGAAAATATGATGGTGAAAGCCAACAGTTTTGAGTGTACCATTGTTGAGGGTCACGGCGTGAACGCTGCTGGGTCTGAACTCTCACCTCAGCTGGCCTCAGTACCAGTGAAAGGTGGCATTACGCCGAAGTGCAAGTTTGTCAACGTGGAGCTGTGTGGCACGAAACCGCAGGAGGGAGTGAGTGGAGTGTGCGCCACCATTCTTCTTGAGAACCCAGCTGGGCGGTGTGCCGTAACCATGCAAGATCTACGACACCAGGCGACTGCAGTGTTTGGACTGAGAGGTCTGAGTATGCAACTGTTCCTTGATGCAGACCTCACACGGGAAGTTAAACCTAACGACAAGCCCATTGATTACGCCACACAAACATTTTTCCTCGCCCCAAACAACATAGACGTCCATCAATGTCAGGGTCAGTGCAGCGACCTCAGGTCACCGGTGTGTCACTTCGTAAATGTAGAACTGGTGAGGAAAACAGCTAAAGGAGAAGTCAAGGGGACACTACTGTTGGAGAACCCTTGTGGTGATAGGTTTACTACAGACCAACTTACAGAGCAGGTGAAGACCGTTTTTGACTTGAACAGCTCCACACCAGTCCTCAGCAGAACGAAGTCCGTCGAGGATGAAATACACGTTTCCAACATCACGAGTTTACACTCGGAAACACTATATGCTATAGTTAATTAGAAACTTCACAAATGCTGTGCACTTCTTATGATGACACAACAAAATACGAGTACCTCATACAAGAATAGCCACGAGAACAGCCAATTGTGGCAAGACAAGCATTACAATTTTATCGGTTGCAATGCAATCGGCTGTTCTTATAAGAGAAACTTATATTGTGTGGCATCACTTTTAGTCTGGATTTAATGAAGTATTTTTAATAAAGAAAATATATTTTCTTGCTGCATTTCCAATAAGTGTTTTCAAGAGTTTTGGAGATTCTTTGCTATCAAGTCAGTATGTTCTTCTTGACTGATATATACAAATTGGTGATGTGAGCAAATAGCTGTTTATATATGTATTAAAATACAGTACCCAGTGATATTAATCTTAGCAAGCAGCTGGACAGAAACTGACTGTTCGTATGGATCAGAACTAAAAAAAAAAACTGTCCAGACTAAATAAATATGTTTGTGGTGTGTTTCAGCCTGTTTGAAAACTATTTAAATACACACAATTATATATTTTTCTAATTTGTTTTTGACAGTACTGGGCCCATGCTTATAAAACTTTTAGAGTCCAGACTCTGTCTCTAATGATGTCTTTCTCACATACAATTTGTATGGCATTGCCATGACGTTAGTCTCAGACTCTGTTCATGTGCGCATCAGTTACCAAATGAGGACTTGACAAAAATGTAGTTTTAGTGAGTTTGAGCCAGGTGTTGTCCAAATGGCAGCATTAAGGTCGTCATGTAATAAACATATTTCAGTGTATATAGTTGATAAATATTTCAAATTATATTATATTAGAAAGTGAGCATTCACACATGTTTTTGACAGTACTGATCTTAACTTTGATTAATTGGGCATTGGGAGTTTTTAGTTTTATTTCCCAGTTAGTTGTGAGGTTAATATCACAAATGCTATGTAAATTTGTGCAGTAGATTCAAGTTCCATCAATGTAAACTTTGTGTATTTAACTTTCATAATATGTCTGATATGATGTTAAATCCCATTTTGTTTTATTGTCTTTAGTACCATCTAATATTATTATAAATAATTTTAGAGACAGTCTAATAAGTTGAAAAACTTGTGTCCAATCAATTTCTTTAGTTTTTTTCTCAGTACAATAAAATAGGTTTTAGTCGGTCATTACGAACGAAATTAATGTTTTAAGAACTGAACGATCTTAGTTATTGAAAACTATCCCCTCAATGTGCATTAATATAATAGACTAATACTTAATTTAATTTTTAGAAAATTTACATTATGATAATTTATGTGATTATATTGTAGAAAAATGTTTCATTGTTTTTTAAATGTAAAGATTTGCAGCTTGTAGTCATGACTTTGTAATAATGGCTTCTTGAAATTGCATAGAGATACAGCTTTAAGTTTTAAGTAATTTTCCTGTTAATTTTTCAGCTTATTTATTTCCCTGATGGAAGCAATAAACATTCTGTTATTCATTTCACATTTTGCTTTTCTTACAGAATTACAATCTAATTAAAGTTAGCTCCACTGGTTAATAACTATTACCTGTGGATCTAACAGCAGCCCATTGGAGCTTATATCTAGTTGAC

Transcript

ctg1000-1.5-1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08264	Anticodon_1	Anticodon-binding domain of tRNA ligase	Domain	Interproscan
PF19302	DUF5915	Domain of unknown function (DUF5915)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR009080	Homologous_superfamily	Aminoacyl-tRNA synthetase, class Ia, anticodon-binding	Interproscan
IPR013155	Domain	Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding	Interproscan
IPR023586	Family	Isoleucine-tRNA ligase, type 2	Interproscan
IPR033709	Domain	Isoleucyl tRNA synthetase type 2, anticodon-binding domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR42780	SOLEUCYL-TRNA SYNTHETASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000049	Molecular Function	tRNA binding	Interproscan
GO:0000166	Molecular Function	nucleotide binding	Interproscan
GO:0004812	Molecular Function	aminoacyl-tRNA ligase activity	Interproscan
GO:0004822	Molecular Function	isoleucine-tRNA ligase activity	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0006418	Biological Process	tRNA aminoacylation for protein translation	Interproscan
GO:0006428	Biological Process	isoleucyl-tRNA aminoacylation	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for ctg1000-1.5-1 global RNA-seq network