Gene detail

Detailed information of ctg1-10.9-1 in Gigantopelta aegis Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
ctg1-10.9-1	UNCHARACTERIZED	chr4	82836806	82849734	-

Gene Structure

More details in Jbrowse Sequence

CDS

ctg1-10.9-1

CTTTTGTCATGGCGGGCAGCTGTGAACGGAACAGTTTCCGATATGGATGGGAACGGATGGGACGCGAAAAGCGATGACATGGACATTGATGACTTCAGCATTGCCTTGAGATTACAGGAACAATTTGACAGAGAAATCAGTGAAAGTTTTGTAAAATCCAGTTCTTTATTAACAGCAGAAAAGACTGAACTATCTCTGATTGATCCACAATGGGAATTGACTGACCCTAACCCAGACATAAGAGCTCTTTTCCTACAGTATAATGATCGCTTTTTTGAAGGACGACTCAGTGGAATAGAAGTGAAATGGAGTCCCAGAATGACACTGTGTGCAGGACTGTGTTGCTATGAAGGTAGAGGAGGATTGTGTTCCGTCAGATTGAGCTTGCCTTTACTCCGTCTCCGTCCTAGGAAAGATCTAGTGGAAACACTGTTGCATGAAATGATCCATGCCTATCTATTTGTGACTGATAACAACAAAGACCATGATGGGCATGGACCAGAATTTCATAAACACATGCACAGAATTAACAAGGAAAGTGGCACAAAGATTACAATATATCATACCTTTAATGATGAGGTGGATAGCTATCGTCAACACTGGTGGCGATGTAATGGACCGTGTCAACAGAGACGTCCCTATTTTGGGTATGTGAAGCGATCTATGAACCGGGCTCCTTCATCAAGAGACCCTTGGTGGGGAGAACACCAGCGGTCATGTGGTGGGACGTATATTAAGGTCAAGGAGCCAGAAGGATATGGACAGAAGAAAAAATCTAAGGGTGAATCGTCGGTAAAGAATGCAACAAAAAACACAAATGATGATGCAGACTCGAACGGTACTGACATTCGCTCATTTTTGTCAGGCTCCAGCAAAACAAAAACAGGTGGTAAAAACAAAGAGCATAAAATTAAGAAATTACCCAATGACAGTGATAATGACAGTGCAAACAGTCTAGATGATTGGTTTTCTGATGATTTTGATTTGAAGCCTGCCTCGTCAAAACCAAAATCAAGCAATACTTCAAATAGATGGATTCCTAAACCACAGAGTGGACTGGTGAATATCCACACTATATCAAATAAAAGTCACGTAACAGAAAATGCAACAAAATCTACCAAGTCTTCCACTAATAATGGGAGAATTCAGACAATCTGGGATACAATGGATGTGAGTGACGATGCAGGTTCTTCCAGTGGAGAAATTAGTGATATGAACCAGACAAATGGTGATTCCTGTAAACAGTCTTCTTGGAATGTTTCTGGTTCCGGTCAGACATTGGGTGCCAGTGCAGATGGAAATTCCTTTCTTGCCCTTGAAAGAAAGAAATTAACTGAAGCTTCTCAAAGCAGTTTCGGATCATTTGCATTGAATAATGGTATCGAAATAGAAGCACCTAAAAGAAAAATTGAATCCAATAGCTCAATAGCTGTGATATTGTCCGACAGCGAAGATGATTCCTCTGAAATAAAACCATTGAGAAAAAAACTCAAAGTGTCTTCACTAACCAAAAATGCTGGCAATAAAACTCATGCCACCAAAAGTACACAGAATATAAAACAAAATAAAGAGAATGAAAACAATTATGGATCGAATATGGATATCAGAAGGTTGATGAGCCCAGGGAAGGCTGGTCCTTCCATGGTAGAAGCAGCACACCCATGTCCAGTTTGTAAGACACGCATACCAGACTCACAGATAAACTCTCACTTAGACCAGTGTCTGTCTTGGCAATAACAGATGTAAAGTTTTGGAGTTTTCTATCCATTATATGGGTTTGCATGTTTCTTCACCAATACTGCTGTTATGTGATAACCTGGAACACGATGGAATTAGTTTATAATAAACAACTTTCTGGACTGTTCTTCATGTTGTATAAAAGCAGTTTTTTTTAAAAAGAAAGAAAAAAGTACAAACGCTATTAAGTAGATTAGTGATATGACTCACCAAGTCAAACAAAGTTTTGTATAATTTATAGTTTAAAAAAAAAAAAAAAAGTTGTTTTACTAGCTGAGAAGAAAAAGTCTAAGAAAAAAGTTATAAAAGCAATTTAACACTGAAAAAATAGGATTAATTGGATGAACTAACAGAGCATTTATGGCTTTGTTAGGTAGATCATTTTCTGATCTGTAATTTGTCAAGGACACCAGGTTTTTTTTAATTTCATAACTTAATAAGTGATACATATAATTTTCTGATCTGTAATTTGTCGAAGACACCAGGGTTTTTTTTTTGTTTGTTTCATAACTTAATCAGTGATACATATAATTTTATGTAAAATATTTTAATATTTTTGATAAACTATAGATTAACATTAACGTTAATAAGTATTTTATGCTGTGATGGTCATATTTTCAGACTTTTGGGGGCCTATATTTTTATAGTGTTAATGACACAATATTTGCAACTTTTTTTGCATTCATTGTCTTTATGAATAAAGTTCTGAAATCTGCTATTTATTTAAGCAAGTTATGGCATAAATAATGTTTTATTTACTTCATGTTTTTTTTACAAGTTTTGGTTTGCATGCAGTGCATAATGCAAGTCAATAGAACCATGTTTTCTATCCAGCTTTTGGACCACTGTCAACATATTTTGGTTAACGTTCAGGCATAATATTTCCTGAGGTCGTTATGTCATAAGAATTAACCACCTCAGTGGACCCATCCTCCGAATGAGATTTTTTTTTCCCTTGTCCCAATCAGTGACTCATGTCAAAAAGCCTGTGTCAAAGTGCACATAAAAGATCCCTTGCTGCTAATGATAAAATGTATCGGGTGATCTCTGAAGACTAGGAGTCAACACTTTTGGGTATATTTTTATTTTGTCATTATTTTTATTCCTGTAAGACCATTCAACTATTCTTCAGAAGCAGTCACTAATCTAATCACATTAAAAGTATAACACCCTAACTATAGTCCATGACATTGCTGATTGACCTGGGCAATTGCAGGGGTTGAATAATTAATTAAAAATCATGATGGACTTCTTTGATGGAAAATGAAAGCAACCGGGTGGGGGGGGGGGGGGTGTAATTATATATTAACTTGCTTTTCAACTGGGCTGTTCCAATGCACTCTCCAATGTTGGGGTGTGTGGGCAGTGCCCCCTTGGCCTACCCACTTACACCTATGGTAGATAAATAATATTCGATCCATTGTGGATTACCTGTTCGTTAACACTATTGACATGTATATCTTGGATGGATCTACTTTAAATTGTTTCTGAATCAAGTATACCTGTATGTTTTTTCCTTACCAGTACATATTTTGTTTAAAATAAAATTGTACATTCATTCATTTCATTTTATGAATGAATAAATGTCTTGCATAGAACAACACACTTTTGTATGTAATATAAGTTTCTTTACACCAGAGGAAAACCAAATCAGTATATATATATATTTATTGTGCACAGTTGTATATGGTTATTCATTCACCTATTTTTGTGTTGCAATATGTTGCTATTCTCACTAATAAAGAATTTAATTGCTGGTACCATTTTTTGTTTTTTTTTACTGTGAGGTGGGATGTGGTTCAGGTCAGGTGAACAGTACTTGCCAAAGGTGTGATGGACTCTGGCGTTTTCTTCCTGTCCCACATGGCAGACCCTAGGTTTCAGTCCGTAAAAATGGTTAATCTACAAACCTGTAACC

Transcript

ctg1-10.9-1

Protein

Gene family

Gene family	Subfamily
Ubiquitin Family	UBD\|ZnF\|UBZ

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF10263	SprT-like	SprT-like family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006640	Domain	SprT-like	Interproscan
IPR006642	Domain	Rad18, zinc finger UBZ4-type	Interproscan
IPR044245	Family	SprT-like domain-containing protein Spartan	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21220	UNCHARACTERIZED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0003697	Molecular Function	single-stranded DNA binding	Interproscan
GO:0004222	Molecular Function	metalloendopeptidase activity	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006281	Biological Process	DNA repair	Interproscan
GO:0006974	Biological Process	DNA damage response	Interproscan
GO:0031593	Molecular Function	polyubiquitin modification-dependent protein binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for ctg1-10.9-1 global RNA-seq network