| Gene ID | Annotation | Chromosome | Start | End | Strand |
|---|---|---|---|---|---|
| alvinactis_v1_g9979 | CENTROMERE/MICROTUBULE BINDING PROTEIN CBF5 | chr_5 | 842747 | 848616 | + |
| CDS | |||||
| alvinactis_v1_g9979 | |||||
| Transcript |
| alvinactis_v1_g9979 |
| Protein |
| alvinactis_v1_g9979 |
| Gene family | Subfamily |
|---|---|
| - | - |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF01472 | PUA | PUA domain | Family | Interproscan |
| PF01509 | TruB_N | TruB family pseudouridylate synthase (N terminal domain) | Family | Interproscan |
| PF08068 | DKCLD | DKCLD (NUC011) domain | Domain | Interproscan |
| PF16198 | TruB_C_2 | tRNA pseudouridylate synthase B C-terminal domain | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR002478 | Domain | PUA domain | Interproscan |
| IPR002501 | Domain | Pseudouridine synthase II, N-terminal | Interproscan |
| IPR004521 | Domain | Uncharacterised domain CHP00451 | Interproscan |
| IPR004802 | Family | tRNA pseudouridine synthase B family | Interproscan |
| IPR012960 | Domain | Dyskerin-like | Interproscan |
| IPR015947 | Homologous_superfamily | PUA-like superfamily | Interproscan |
| IPR020103 | Homologous_superfamily | Pseudouridine synthase, catalytic domain superfamily | Interproscan |
| IPR032819 | Domain | tRNA pseudouridylate synthase B, C-terminal | Interproscan |
| IPR036974 | Homologous_superfamily | PUA domain superfamily | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR23127 | CENTROMERE/MICROTUBULE BINDING PROTEIN CBF5 | Interproscan |
| GO terms | Category | Description | Source |
|---|---|---|---|
| GO:0000495 | Biological Process | box H/ACA sno(s)RNA 3'-end processing | Interproscan |
| GO:0001522 | Biological Process | pseudouridine synthesis | Interproscan |
| GO:0003723 | Molecular Function | RNA binding | Interproscan |
| GO:0006396 | Biological Process | RNA processing | Interproscan |
| GO:0009451 | Biological Process | RNA modification | Interproscan |
| GO:0009982 | Molecular Function | pseudouridine synthase activity | Interproscan |
| GO:0031118 | Biological Process | rRNA pseudouridine synthesis | Interproscan |
| GO:0031120 | Biological Process | snRNA pseudouridine synthesis | Interproscan |
| GO:0031429 | Cellular Component | box H/ACA snoRNP complex | Interproscan |
| GO:1990481 | Biological Process | mRNA pseudouridine synthesis | Interproscan |
| KO | Enzyme | Enzyme ID | pathway | mapID | Source |
|---|---|---|---|---|---|
| - | - | - | - | - | - |
Maintained by Dr. Jiajie She in Longjun Wu's Lab & Pei-yuan Qian's Lab and supported by Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou) & The Hong Kong University of Science and Technology
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