Gene detail

Detailed information of alvinactis_v1_g989 in Alvinactis idsseensis sp. Nov. Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
alvinactis_v1_g989	TRANSFORMING GROWTH FACTOR-BETA RECEPTOR TYPE I AND II	chr_1	16817947	16834898	-

Gene Structure

More details in Jbrowse Sequence

CDS

alvinactis_v1_g989

ATGAATTTCAAAAGCATCATTTTGGCTCTTCTAGTCATACTAGCAACTTCATGGAAAGTTCGAAGCGTTCGTATTTGCATGTTCTGCGACGCTTCGAGTGCCACGAACTGTGACGTGAAAGCAAAGCCGAAATGTACCGTCCCCAAATGCTCCAAAATGAAGATAGAGAAATGCCCAAAACACGACGACATATGCCTCGCATCGTGGAAGCACACCGAGCAAGGCACAGTCATACTTGCTGGATGCTTTCCCCTACCTCCGCATTCTACCAGGACGAAGTATAACAAGCTCTGTAAACCATGGAACAGAAACGGTACTTATACGTGTTTATGTCGAAGGAATAGCTGTAATAAGTACCCTTTGTCAAGTACTCTAGCTCCTACCATGGTCACTAACCAGACAACGAGTGTAATTAGAACTCGAAGGACAACAGAACAGGTGGTGAACACAGAATACAAGATATTACAAACATCATTTTCGCTACAGTGGATTCTGATTACCATCGCATCGTCGCTGCTGCTGATATTCACATTTACAATGTACTATGTTAGCTGGAACAACGGTAAAACTACTCACGGAGATTCGTCTGTCCTTGCTGTCCACACTCTGAGACAAGCGGAACCCCTAAGCCTTCCAGAGCTGACGGCTGACACAATGATTTTCGAGGGCAAATGTAGCACGGTGTGGCGAGGAAAGTTTAGTGGTGTTGAAGTTGCAGTCAAGCGTGTTGGAATGGAAGGAGAAGCACTATGGAACAACGAGTGTTTTATTTACTCCATTTGCAAGCCACATCACGATAATGTTGTTAAGTTTATAGCCGCCAGTGACCCAAGCAACAGTGCAACTCAAATGTGGTTAGCAACAGAATATTGCGAGCAAGGTTCACTAAAGACCTATCTCGAGTCATGTGAATTGAGTTGGGAAAGACTGCTGACCATGGCCAGAGACATCACCGCGGGCCTGGGTTTTCTACACAGTGATCGACTACCAGGAGGAGGTAGTAAGTCTGCAATTGCTCATCAAGATCTCAAGAGTAACAATGTTCTTATTCGACTAAACGGTACTTGTGCGATTGCCGATTTTGGTCTTTCTTTGGATTTATCTCAGGATTACATGCAACATGTGTACCGTAGTGGACAGGTTGGTACTTTTCGCTACATGGCGCCGGAGAAACTCGAAGCAAGAATTGATGTCGAGAATCCAGAATCCTTCAAGCAGATTGACGTTTATTCGCTCGCTCTTATTTTCTGGGAATTACTCACTCGGTGTCGACATACCGCAAACCGAGTAGACAACACTTGTATGGATTACTCTCCCCCGTACCAGGAtttgattggatgccatccaaccctccatcagatgatagaaatagtgtctattaatggctgcaggccaagtccacctaaagtattaatcgaccaatctaagGATGATGTTAAATGCCTATGGACGACTATCATGGAGTGTTGGGACCAAGACCCCGAGGCTCGTCTCACTGCAGAGTTATTGCTAGTCAAGCAAGCAAGCACACGCAGACCACTacatggatgcaagagggccagccagctagcacttgacacccaagtagacagacagacaaaggctgagcaagcatttacacatggatgcaagaggaccagccagctagcacttgacacccaagtatacagacagacaaaggctgagcaagcatttacacatggaggcaagaggaccagccagctagcacttgacacccaagtagacagacagacaaaggctgagcaagcatttacacatggaggcaagaggaccagccagctagcacttgacacccaaacaaaggctgagcaagcatttacacatggaggcaagaggaccagccagctagcacttgacacccaagtagacagacagacaaaggctgagcaagcatttacacatggaggcaagaggaccagccagctagcacttgacacccaagtagacagacagacaaaggctgagcaagcatttacacatggaggcaagaggaccagccagctagcacttgacacccaagtagacagacagacaaaggctgagcaagcatttacacatggaggcaagaggaccagccagctagcacttgacacccaagtagacagacagacaaaggctgagcaagcatttacacatggaggcaagaggaccagccagctagcacttgacacccaagtagacagacagacaaaggctgagcaagcatttacacatggatgcaagaggaccagccagctagcacttgacacccaagtagacagacagacaaaggctgagcaagcatttacacatggaggcaagaggaccagccagttagcacttgacacccaagtagacagacaaagaccgatcaagcatttacacatggaggcaagaggaccagccagttag

Transcript

alvinactis_v1_g989

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00069	Pkinase	Protein kinase domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000333	Family	Ser/Thr protein kinase, TGFB receptor	Interproscan
IPR000719	Domain	Protein kinase domain	Interproscan
IPR008271	Active_site	Serine/threonine-protein kinase, active site	Interproscan
IPR011009	Homologous_superfamily	Protein kinase-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23255	TRANSFORMING GROWTH FACTOR-BETA RECEPTOR TYPE I AND II	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004672	Molecular Function	protein kinase activity	Interproscan
GO:0004674	Molecular Function	protein serine/threonine kinase activity	Interproscan
GO:0004675	Molecular Function	transmembrane receptor protein serine/threonine kinase activity	Interproscan
GO:0005024	Molecular Function	transforming growth factor beta receptor activity	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0005886	Cellular Component	plasma membrane	Interproscan
GO:0006468	Biological Process	protein phosphorylation	Interproscan
GO:0007178	Biological Process	cell surface receptor protein serine/threonine kinase signaling pathway	Interproscan
GO:0007179	Biological Process	transforming growth factor beta receptor signaling pathway	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0017002	Molecular Function	activin receptor activity	Interproscan
GO:0034713	Molecular Function	type I transforming growth factor beta receptor binding	Interproscan
GO:0043235	Cellular Component	receptor complex	Interproscan
GO:0046332	Molecular Function	SMAD binding	Interproscan
GO:0048185	Molecular Function	activin binding	Interproscan
GO:0050431	Molecular Function	transforming growth factor beta binding	Interproscan
GO:0071363	Biological Process	cellular response to growth factor stimulus	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-