Gene detail

Detailed information of alvinactis_v1_g9807 in Alvinactis idsseensis sp. Nov. Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
alvinactis_v1_g9807	ARFAPTIN-RELATED	chr_4	29894440	29902654	-

Gene Structure

More details in Jbrowse Sequence

CDS

alvinactis_v1_g9807

ATGATGGAATATGAGTATGAAATAGACCCAAGGGGTCTTCAAGGTAAACCAGGTTCTGTTTCGCTAAAGAAAGACAAACAGAACCTTATCGGTATTAGTATCGGTGGTGGAGCCCCGTTATGTCCTTGTCTATACGTAGTTCAAGTCTTTGACAATACACCAGCCTCTAAGGAAGGGACTTTGCAAGCTGGTGACGAGATCGTCGGAGTTAATGGCAAATCTTTGAGAGGAAAGACGAAAGTCGACGTGGCTCGAGCCATCCAAGCAGTGAAGGAAGAAGTCATCATCAATTATGTGAAACTCCATGCTGATCCTAAAGAAGGAAAAACCCTTGACATTGTCATGAAAAAAATGAAACATCGCATGGTGGAAAACATGAGTTCTTCCACAGCTGATGCATTGGGATTAAGTCGAGCCATTCTTTGTAATGATGGCCTTGTCAAAAAACTTGAAGAACTTGAACAGAATTCCAATGTTTACAAAGGTCTAGTGGATCATGTACGGCAGTATCTACACAGTTTCTGGCAGCTTTCACAAACACACAAAGAACTTGGAGATATCTTTGCATCAGTCGGGGTGAGAGAACTACAGCCTAATGCTAGTGAAGCTTTTGCAATCTTTAGTGAAGCTCACAGGAATTTTGAAAAATTAGGAATGGATTTTCTCAAGACAGTGAAGCCTATGCTGACAGATCTAAACACATATCTATGCAAGGCTATTCCCGATACTAGATTAACTATTAGAAAATATGCTGATGCTAAGTTTGAATATTTGTCATATTGTCTAAAAGTCAAGGAAATGGACGATGAGGAATATGCTTATGCAGCCCTTCACGAATCACTCTATAGAGTGGAAACTGGGAACTATGATTACAGGGTTGTACTGAGATGTCGACAACTTGCAAGAGAGAGATTTGCCAAACTCAGGCAAGATGTGCTTATCAAACTAGAGTTACTGGACCAAAAACATGTACAAGACATTGTCGTTCAGCTTCAACGCTTTGTGTCAGCCGTGGCCTCCTACCATAATGAGTCATACTCTGTACTAAAGGATGCTAACGTCTTTCCTATTGAAGTAGACTTGACACGGGGAGCTCTTGGAAATGGAGAAATCTTCCTGAAGGTAGAGCTATCACAACTGACTACTAGACTTGAAACGACCAACAAAGAACCACCAAGACGCATCGATATGGAGAATCTAGACGAACATCATTCAAGCGTCGAACCTGAAAAAGAAACGCCATTTGAAACGGAAATGGAGCCGATGGAGGATTCAAGTGAAGATGAATGCCGATCACGGAATCGTAAAACACCACTGATTGAGATTGGAGGATTTCTGTCGTTAGCTGTTGTCACCTATACATTGTATACTACTATCATCACATCAGCTGAAGATATCCTTGCTTCAACTCATATCCCCACATCTTCTACCATCCTCTGCCTTAATACCCCATACTTCATAATGACTTTATTTATGCCATATTATGTGGACAAGGTTCCTCTAATGGCAAAAGCTGTAGCTTCAGCCATGCTATTCGCTCTGGCTCTAGTTCTTATTGCTTTGATTACAACTCCAGGTCTCAGGCTAATTGGTATCCTTGTCGCCTCTCTTGGTCTTGCCACGGCAGAAATTGGTTTTCTCTCAGCGACGTCACTGCATCAGGATATAACGATGCATGCATTTTCGACGGGGACAGGTCTTGGAGCGATAATCGGACCTGCGTTATACACAATTATGACAACATTTGTGTGTGTCCATCCAAGCACAGCTCTTCTACTACTACTGTTTATCCTTCCTCTCTTTCCAATCATCTCTTGGTATGTAGCAAAGCACACGCAATTACGACCCGAGGAATCTGGAGACGGAGTAGAATACTCTCGTATAGGAGAAGACCCAACCGATCATACCGAGGTTCATCAAACATTGACGAGAGAGGAAAAGGTCCAAGCAGGAAAAGCACACATGCATCTTGCAGTACCGTTATTCTTTGGACTGATTGCCGATTACTTGACCATGCAAGGTGTAGTAACAACCATCGCCTTTGAAGACTCGCCCTTCGATCCTCGGGATCATTATCAATATTACACCATATCATTCTGGATTGGAGAACTACTAGGTCGCTCATATGGATTTGTACTCTCTTGGGGAAAACCCGACTGGACCGTTGTCACTCAGAAGACGTGGATTTTCACAACAATATTGGTTGTCAACGTGTTTTTCTTGATTCTTGCAAGCTTATACCGATTCCTACCGAGCTACGTAGTCGTCATGATGCTTACATTTGTTACTGGGTCCGCTGAAGGCGCTCTTTATCTGAACTCATTTGCAATGGCGGGAAGAAACATGAGCCCGCGTTACAAGGAATTTTCGCGCGCTTTCTTGACTACCGCTATACAAGGTGGTGTGATAGTCGCTGGTGTTACAGGTTTGTGGGTAGAACCAGCCTTGAAGGATCACTGCGCTCAAATAATCACTAACACAGAGTATTGCTTTACTAGATCTATGCATGGATGGAATGTTAGTACTTCTTGTATAACTTAA

Transcript

alvinactis_v1_g9807

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00595	PDZ	PDZ domain	Domain	Interproscan
PF02487	CLN3	CLN3 protein	Family	Interproscan
PF06456	Arfaptin	Arfaptin-like domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001478	Domain	PDZ domain	Interproscan
IPR003492	Family	Batten's disease protein Cln3	Interproscan
IPR010504	Domain	Arfaptin homology (AH) domain	Interproscan
IPR027267	Homologous_superfamily	AH/BAR domain superfamily	Interproscan
IPR030798	Family	Arfaptin family	Interproscan
IPR036034	Homologous_superfamily	PDZ superfamily	Interproscan
IPR036259	Homologous_superfamily	MFS transporter superfamily	Interproscan
IPR037959	Domain	PICK1, BAR domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12141	ARFAPTIN-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0002092	Biological Process	positive regulation of receptor internalization	Interproscan
GO:0005080	Molecular Function	protein kinase C binding	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005543	Molecular Function	phospholipid binding	Interproscan
GO:0006886	Biological Process	intracellular protein transport	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0019904	Molecular Function	protein domain specific binding	Interproscan
GO:0032588	Cellular Component	trans-Golgi network membrane	Interproscan
GO:0034315	Biological Process	regulation of Arp2/3 complex-mediated actin nucleation	Interproscan
GO:0043113	Biological Process	receptor clustering	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-