Gene detail

Detailed information of alvinactis_v1_g9480 in Alvinactis idsseensis sp. Nov. Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
alvinactis_v1_g9480	TRNA-DIHYDROURIDINE SYNTHASE	chr_4	25368885	25384002	-

Gene Structure

More details in Jbrowse Sequence

CDS

alvinactis_v1_g9480

ATGGCGGAAGACGAAGTCGATATGTCGTTAGACGACATTATTAAgaagaacaagaaaacaggcagaggtagaagaggcggaggaggtgctggtggaagaagaagaggaggcggaggaggcggaggaggcagtggtggaggtggaggtgcaatgagacgaggaagaggaagaTCAACCACTCGTTCAAACCCCTACACACGATCTCAGGACGTTCCAGATAGATGGCAGCATGATAAGTTTGAAGATAGTGGCCTTTCAAGTGGCGGTCGTCGTAGTTTTGGCGGCGGAGGGTTGTCAACTGGAAGCAAGCTCAGTATCTCGAACCTCGACTTTGGCGTCTCTGATTCCGACATCACGGAGTTGTTCAGTGAATTTGGGAAATTAAAGAAATCTTGTGTGCATTATGATGCCTCTGGTAGATCTCTTGGCACAGCAGAAGTGGTATTTTTTCGCAAAGAAGATGCACAGAAGGCATTAAAACAGTACAATGGAGTACCTTTAGATGGTCGAGCCATGAAAATTGAATTAGTGGTAGCAGACGGTGGAAGGGCATTTGGGGGAGATTTTGGTGGAAGGTCAGATCgaagaagtggtggcggtggcagaagtagcggtggcggtggcggcggcggcggtgtcagcagtggtggaaggggtagaggaagagggcgtggacgtgggcgtggaagaggtggtggtggtggtggaggtggaggATACAAACAGAATAACAAGACTGCTGAGGAGTTAGATGCCGAGCTGGATGCCTACCGAGATAATAAAGAGTATAAAGTGCCATTTTTGTTAAAACTTGGCATTTTAAAGTATCTTGTAGAAAACTTGATTGAGTTCACGCAGAtggaggtgagtagtggtggatatttcccgagctgcgagtcttcaagcggagagGAGCAGAAGATGTCTGTCACTAAAAGAAAAGGGTATGAGTTTTGGCGAAATGACTTAAAAGCAGCCAAATACGTCGTGGCTCCAATGGTCGACCAGTCTGAGTTACCATGGCGTATGTTGAGTCGAAAACACGGGTCTCAGTTATGCTATACTCCAATGCTACACTCGGCTATGTTTGTTAAAGATCCTATATACAGGAAGGAAATATTTACCACATGTGTAGAAGATCGTCCACTCATCGCGCAGTTTTGTTCCAATGATCCCGAGACATTTGTCCAAGCAGCACAGTTGATTGAGTCCCAGTGTGATGCTGTTGATTTAAACCTTGGTTGTCCTCAGACTATCGCAAAGAGAGGTCATTATGGAGCCTTTTTGCAGGATGAATGGGACTTAATTTCAAGAATAGTCAGTCTTGCACATGAAAAGTTATCTATCCCAATAACATGCAAGATAAGAGTGTTTGATGACATCAAGAAGACAATACAATATGCACAAATGTTGGAAAGAGCTGGCTGTCAGCTATTAACAGTACATGGCAGGACTAGGGATAAAAAGGGGGCCCAAACTGGCCTTGCAAACTGGGATTTTATCAAGGCTGTGAGAACAAGTGTGTCCGTACCAGTTTTTGCAAATGGTAACATTCAGTATTTTAGTGACGTACAGGCATGTTTAGAATATACTGGTGTTGATGGTGTTATGACCGCAGAGGGAAATCTTCACAATCCTGCTCTTCTCTCAGACAAACAGCCTATGGTTTGGGAGATGGCTAAACAATATCTGGAACTTGTAGACCAATATCCTTGTCAACTGTCAGCTGTCCGAGGACATTTGTTTAAACTCATGCATCACAGCCTGTGCAAGCATACGGATCTTAGAATAAAACTTGGAGATGCCAAGTCTCTTGAGGAAATCAAACAAATTAATTTAGATATAATGCTTAGACTCAAGAAGGATGCTGAAGACAACACTGACGAGCCAGTGTCATACTCAGGGTTACCTCACTGGGTATGTCAGCCTTACATTAGACCAAGTCCCAAAGATAACTCACCAGTGTCGTCGTCATCACAAGAGAATATCACACAAGAAGGAAATGAGGAAAATAAAGAAATTATTGAAAAACTAAATAGAAAAGCTCTGAAAAAGCAAAAGCGATTATTGTACCTGAGCAACAGAGTCCCAGTTGATTGGTGTTTCTGCACAGAATGTAAAATTAATCCCATGGGTAAAAGGTGTGAATATGAATTATGTCGGCACTGCTGTAAAATAAAAACATCGACAAATAAGTTGGACTGCGTCG

Transcript

alvinactis_v1_g9480

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan
PF01207	Dus	Dihydrouridine synthase (Dus)	Family	Interproscan
PF13865	FoP_duplication	C-terminal duplication domain of Friend of PRMT1	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR013785	Homologous_superfamily	Aldolase-type TIM barrel	Interproscan
IPR018517	Conserved_site	tRNA-dihydrouridine synthase, conserved site	Interproscan
IPR025715	Domain	Chromatin target of PRMT1 protein, C-terminal	Interproscan
IPR035587	Domain	DUS-like, FMN-binding domain	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11082	TRNA-DIHYDROURIDINE SYNTHASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0008033	Biological Process	tRNA processing	Interproscan
GO:0017150	Molecular Function	tRNA dihydrouridine synthase activity	Interproscan
GO:0050660	Molecular Function	flavin adenine dinucleotide binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-