Gene detail

Detailed information of alvinactis_v1_g937 in Alvinactis idsseensis sp. Nov. Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
alvinactis_v1_g937	STAR-RELATED LIPID TRANSFER PROTEIN 9	chr_1	15739172	15765997	+

Gene Structure

More details in Jbrowse Sequence

CDS

alvinactis_v1_g937

ATGCAGAATCGATCAGAAGCCCTGAAAAGTCTTCAATCCGCGGTAGAAATGCGCTTTACAGAGGTTAAAATGTTGAGTGATTCTATGGGCCAGCTCAAGATTGCACAGCAGAAATTCAAGGATTCCAAAGAAAATGTCGTGAAAATGGCTAATCAGGACACAGGAAAACAGATTCTGGTTCCACTTAGTAGTTCTATGTATGTTCCTGGTACTCTAGAGGATATCAAATCAGTTATGGTCGATATTGGAACTGGTTACTTTGCAGAAAAGGATCTTAAAGAGGCAGAGCTATACTTTCAGAGAAAAATGGATTACGTGACAACTCAAATAGAAAAACTACAACCTCTTCTCATAGaaaaacataagatgagacaagACGACAATACTTTTTACCTTAACGTTGTGTACAATAAACGAGAAAAAGCGCGAAATGCTACTCTCATCGTTGAAATGCATGGTGCAACAACAAAAATCATCGACCCCGAGGCACCAGACGACGAGCCCAAGAGTTTTACCTTTGATTACAGCTACTGGTCGCATGATAGTTTTGAAGAGGATGACACTGGGTATTTGTGTGGTACACAAGCTAATTATGCTGATCAGAGAAAAGTATATAACGATGTTGGACGGACAGTGCTGAAGAATGCCTGGGACGGCTACAACAGCACTCTATTTGCCTATGGACAGACAGGCTCTGGGAAGTCGTGGTCCATCGTGGGATATGGAATCAATAAAGGAATTGTTCCTATATTTTGTGAAGAGTTGTTCATTGGTATTCAAAAGAAGAAAGATGAAAGTGACACTGGACAGTACGAGGTCATGTTTAGTATGCTTGAGATTTACAACGAACAAGTTCGTGATCTTCTCAACCCAGCCGCAAACAAAAAAGGAGGATTAAAGATCCGTCAGCACCCCAAGAAAGGGTTTTACCCCGAGGGGTTGAAAGTCGTAGCCGTGAGCTCGTACAAGCAGATTGAAGACAAGATGGAAGAAGGGACGGAAAACAGAACTGTGGCCGCAACAAGTATGAATGCAACAAGCAGTCGCGCTCACACTATCGTTGGAGTGACGTTCGTACAGAAGAGCAAGAACTCCGCGGGAGAAGAGAGTGCGAAGACGTCGCTTATTAATCTAGTGGATCTTGCTGGGAGCGAGCGCGCTGATTCGACTGGAGCTACAGGTGACCGCCTGAAAGAAGGAGCTGCTATCAACCAGTCCCTCTCGGCTCTTGGCAACGTTATCTCAGCTCTTGTCGACAAATCCAATGGAAAGCAAGTACGAGTTCCCTACAGAGACTCAGCTTTGACGAGGCTACTGAAGAATGCATTGTCAGGAAACAGTAAgacagctatgATTGCAGCCATCAGTCCAGCTGATATCAACTATGACGAAACCCTCTCTACTCTGAGATACGCCGATCGCGCCAAACAAATCAAAACCACAGCTACAGTTAACGAAGACCCGACAGAGAAGATGATCCGTGAGCTACAGGAACAGAACGCTAAGCTTCTAGAGAAGCTGAAAGCTGCTGAGTCTGGTCAGAAGATCCGTATCgatgatgatgatgatgatgatgatgatgatgataaATTGTCAGATGAAGAAATGTCTGCACTCAGGAAACAAATTGAAGAAGACATCAGAGCCTCGATGGCAGACACAGACAAAGCCGTTGCAGAAATGAACAAGACTTGGGAAGAAAAACTCGCTGAAACagagcagacatctaggGACAAAGACGCGCAAAAGAAAGAACGAATGGCGACTCCACATTTATGGAATTTAAATCCAGATTGTCAGTTAACTGGGATGATAGTGCACTTGCTGAAGAAAGATAAAGTGAAGATCGGCAACAAAAAGGCTGATCCGCCAGCAGACATTCAGCTTGCTGGACTAAACATCCAAAAGCAACACTGTGAGGTGAACATTAAAGGTGATCGAATTACAATCACTCCAGCTGGTGACGCTAAGGTCTTGATCAACGGTGAACCAATCACTGAAGAGGAAGAACTGGAACATCACGACAGGGTGATGATTGGTACAACTCATTTGTACGTGTTTCATCATCCAAAACAAGCAGACAAGTCCACCATTAAAGCTGATTCCATTACCTACGAGATGGCACAGGAAGAGATTACACAGAATTCTGGATTTGGGCTGGAAGAGAATAACTCCAGAGATGGCTTGTTGCTTCAAGAAGATTTGGTAGATTTGGTACCCATGGTAGAAGAAGCTAACGCCATAAGTATGGAACTCGATAGAAAGGTGTCGTTTGAAGTCGTTGTCATGTCAGCTAAAGCACGTGGTCTTAACGAAGGCAGGGCAGAGCCGTACGTATTAATGCAGAACCTTTATACCGGTCTTGAATGGCTTTGGCCCAAAAACAAGTTTATAAACCGGAAATACCTGATGCAGGAAATGTACAGTAACTTCGAGGACGGTGAGGACTGGGCGCTACCGGACGAACGAGACCCTTTCACAGAATCCCCGGATATTGATTTCATGGTCGGCTGTGTGGAGATTTCTATGGAGAGTCTTGGATATGTGCTGGATATGAGAGAACAGCTCAACATTACAGATTTCAGAGGACGAGAAGTTGGCTTTTTAaatGTCGAGGTTGTTCCTCTGGACAGCAAAGGAAACGAGATTACCGAGGAGACAGACTTGTTTATTGACAACCCACGTGACCTGGTCGGACAAAAGTTAGAATTTGTTGTTCGTATCACGAGTGCCAGAGGTCTCCCCAAGAAATACACGGATGTCTACTGTAGCTACAGGTTGTATCTAGACGAAGACCCAAAAACAGAAAAAGTATCAGGAACAACGAACCCAGACTTCAACTACGAAAGGAAATTCAACTTTGATCCCGTCAAACAACAGTTTGTTGATTATTTGATGAAGAAATCCGTGGTGATTCAAGTTTGGGGCAAACAAGTCCCCGACAAGAAGCCATTAAACAAGGCTGCTAAAGAAGGCAAGGACACCAAGGCCATCATGAAGGCAGAGAACATGAAAAAGGGAATGGCTAAAGGTTCAAAGAATGTGCCAGCTTTGGTCAACCTATCAGATCACGTGGCAATAAAAAAACGCAAAGAAAGATTGGATCTTAAAATGAATCAGCTTCGTAAGCTTTGTGATAAGCGCGAACAGGATGGACACGTTGCTGTAGCGATAAAAGACGTTCGAGCCATAATCGGCGACTCAAGCGGTACGAGTGGGACTGGTACCCAGGGTACACGGAGGCCAAGTGAACGACGAAATGAGAGCTCGACTTGTCTGATCATTTAA

Transcript

alvinactis_v1_g937

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00168	C2	C2 domain	Domain	Interproscan
PF00225	Kinesin	Kinesin motor domain	Domain	Interproscan
PF02996	Prefoldin	Prefoldin subunit	Coiled-coil	Interproscan
PF12423	KIF1B	Kinesin protein 1B	Family	Interproscan
PF16697	Yop-YscD_cpl	Inner membrane component of T3SS, cytoplasmic domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000008	Domain	C2 domain	Interproscan
IPR000253	Domain	Forkhead-associated (FHA) domain	Interproscan
IPR001752	Domain	Kinesin motor domain	Interproscan
IPR004127	Family	Prefoldin alpha-like	Interproscan
IPR008984	Homologous_superfamily	SMAD/FHA domain superfamily	Interproscan
IPR009053	Homologous_superfamily	Prefoldin	Interproscan
IPR018247	Binding_site	EF-Hand 1, calcium-binding site	Interproscan
IPR022140	Domain	Kinesin-like KIF1-type	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR032030	Domain	YscD, cytoplasmic domain	Interproscan
IPR035892	Homologous_superfamily	C2 domain superfamily	Interproscan
IPR036961	Homologous_superfamily	Kinesin motor domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47117	STAR-RELATED LIPID TRANSFER PROTEIN 9	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003777	Molecular Function	microtubule motor activity	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0007018	Biological Process	microtubule-based movement	Interproscan
GO:0008017	Molecular Function	microtubule binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-