| Gene ID | Annotation | Chromosome | Start | End | Strand |
|---|---|---|---|---|---|
| alvinactis_v1_g9291 | SOX100B | chr_4 | 22895126 | 22896358 | - |
| CDS | |||||
| alvinactis_v1_g9291 | |||||
| Transcript |
| alvinactis_v1_g9291 |
| Protein |
| alvinactis_v1_g9291 |
| Gene family | Subfamily |
|---|---|
| Transcription Factors Family | HMG |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00505 | HMG_box | HMG (high mobility group) box | Domain | Interproscan |
| PF12444 | Sox_N | Sox developmental protein N terminal | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR009071 | Domain | High mobility group box domain | Interproscan |
| IPR022151 | Domain | Sox developmental protein N-terminal | Interproscan |
| IPR036910 | Homologous_superfamily | High mobility group box domain superfamily | Interproscan |
| IPR050917 | Family | SOX Transcription Factors | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR45803 | SOX100B | Interproscan |
| GO terms | Category | Description | Source |
|---|---|---|---|
| GO:0000978 | Molecular Function | RNA polymerase II cis-regulatory region sequence-specific DNA binding | Interproscan |
| GO:0000981 | Molecular Function | DNA-binding transcription factor activity, RNA polymerase II-specific | Interproscan |
| GO:0005634 | Cellular Component | nucleus | Interproscan |
| GO:0006357 | Biological Process | regulation of transcription by RNA polymerase II | Interproscan |
| KO | Enzyme | Enzyme ID | pathway | mapID | Source |
|---|---|---|---|---|---|
| - | - | - | - | - | - |
Maintained by Dr. Jiajie She in Longjun Wu's Lab & Pei-yuan Qian's Lab and supported by Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou) & The Hong Kong University of Science and Technology
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