Gene detail

Detailed information of alvinactis_v1_g9192 in Alvinactis idsseensis sp. Nov. Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
alvinactis_v1_g9192	TRINUCLEOTIDE REPEAT-CONTAINING GENE 6	chr_4	21309365	21322672	-

Gene Structure

More details in Jbrowse Sequence

CDS

alvinactis_v1_g9192

ATGGGTGTAGCCGCTGTACGCAATGCTTCAGGCTCAGATGATATCAAGAAAGCGTACAAGAAACTAGCTCTTCAATGCCATCCAGACAAGAACTGCAGTGAAGGAACGGCTAAGAAACAGTTTGAAGAACTTAGTAGGGCTTTTGAAAGTCTTGTTTTAGAAGAAGCCAACGATTCAATAAAGGATAGCGACAAGATTTTCTTCGATTTTCTTGCTGAAATTCTCTTTGGATCTGAAAGTAATAGTGATTTCTTCTCCTTCTTCTGTGGTTCAAAACAACACTGTTGCTTATCTTCTGATGGAGATCCCGATCTTAGatatcaagaagattatgatgatgaggatatcgatggtgaaggtgaACTGGACAGCATTATGGAAATTGTCAAGAACCGTAGGAAGAAAGGAAAAACTGTACCTGATGATTTCCACGAATCTAAGCTACAAGAACTTAAAGTTATGCTAGCACAGCACAAGGAGGAAATGAAAAAGGATGGTTCTAAAAAACAACAGACTGCAAAGAAAGGCAAAACAACAGTGCCTGTAGCTAAGCCTAAACCTAAGAGCAAAAAACAGTTACAAGCTGAACAACGTAGGCGAGATAAGGAAATGCAGCAGATTGCAATGCAACTTgaagaaaaacggaaagaagatgaagagaaggagaaacaaagaaAACAGATGGAGATTGAAAGGCAAAAGCGACTGGAAGAAGAGCGAATTAAGGCTCAGAATGAAGAAAGGAAAAGAAGAGAAAGGGAGCAAAAGGAAAGAGAGAAACAACAGCGTCAAGAGCAAGAGAAGGAGGAGAGAAAACGCAGGCAACAGGAGGaagaaaagaagagaaaagatgaagaagacaagaggaaaaaggttgagaaagaaaagGCTGAAAAGGAGAAGGCAGCTCGGAAGGCTGCGCTACAAGTAGCAAAAGTCAGTGAAGGCCAGCCACAACAGCAACGCACAGACCAGCAACAATACCCTCGTGAAATTCCTCCCAGATTCCAAAAGATGAAGAAACAACAACAGCACATGCAGCAACAGCAGTCCCAATCAACATCATATCCGTCCAACCAACAAGCTACACCGCCACAAAACAGAGCCCAAATTAAACCACAACTACCAGTTGGCAAGAAAAAAGATCCCAATCGCTTTGCTTCCAAGGAATATGCTGGACTAATCAACGAGACGGATGATATTGGATGGCCTAAGGGACAATCTAGGGGTAGCGGCTGGGTAGGCTCTACTGAGGACTGGGAGCAAGAGACCGATAAATGGGGTGCCGTTGACAGAGAGTGGGGAGGAAAGGAAGGAACATGGCAGAAAGTTGTTGACAGGACTGATAACAATACATGGCCTGCTGTGGGCACTAAAACAACAGGGGACAATACAATTGGTAATTCTGACCTTATATCAAAATCTGCGACTTCTTCATCAGCAAATCTTGTGAACACTACGGCATCTTTACCACTGGACTCTAAGTCTCGAAACGTGTTTAGTAATACTGTGAACAATCAACCTTCTTCGTCTAAATCACAAGACTGGAGTGCTACTTCAAATACTGGATCTGTAGGTTTAGATACATGGGACTCTGAATGTGATGATTCTATTGATCGTGCACTTGATGCAGTGGACTCTAAACCGGGTGTGGCCGGAGCAGCAGGGGCTGTAAGTTGGGGTGGAATGGGTGCTGGTGGGCTGGGGGGCTTAATAGGGAACCCTCTTGGCTGGGATGCAGCTTTGAACTCTAAAAGTGACACTCCTAGTAATGTCAAACAGGGCTGGGTAAGTGATGCTAATCCTGCGCCAACGTTAGACTCTTTATCGTGGAGTAAAACACCCGGTAAAGGACCGAAAACAAAACCTGCAGATGAACTGGATAGCAAACCTACTGTTACTAATACCAGCACTTGGGGAGGAACTCCCGCTGATAGTAGTTCTGCTTGGGTTGAAAAATCGGAACATTCGAAAAAGACGGCGGAGAAGGAGAAATCTAGTGTACGCAGTGCATGGGACACAAACTCTTCTGATCAATCGCAAACATCGCCCAATAGAAATGCTTCCTCGGAATCTGCGGATAAACTTGAAGCTAAATCGGAAACATCTGGTTGGGGCGATGGAGCTGTGTCGACCAACTGGGGCACAGCACCTGAGATTAGTGGAACTGCATGTTGGGACAATGCTCTGAGTACTAGTGCAAGGAAAGTTTCGGAATCTAAAGATTCAAAGTCCAATCAAGAGAAAGGTTGGTCAGAGAATGCTGCTTTGTCTAGTAATTCTGATGTAGCTGATAAAGAGGAATGTGCTGATGGTTCCTGGGATGGATGGACCACAGCTTCATCGAAGCGCAATAGGGCTCCTAAACCTGCACCTCCAACCACTAATAGTGATAGTAACGCATGGATGAGTCGATCTCTAAAACAGCTACTAGATATGGGTTTCAAGCAAGAAGATGCTGATAAAGCACTTAGAGCGAATCACATGAATATTGAAAGTGCAATAGGTGAGTAA

Transcript

alvinactis_v1_g9192

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00226	DnaJ	DnaJ domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001623	Domain	DnaJ domain	Interproscan
IPR009060	Homologous_superfamily	UBA-like superfamily	Interproscan
IPR015940	Domain	Ubiquitin-associated domain	Interproscan
IPR036869	Homologous_superfamily	Chaperone J-domain superfamily	Interproscan
IPR041917	Domain	Trinucleotide repeat-containing gene 6C protein, UBA domain	Interproscan
IPR052068	Family	GW182 domain-containing protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13020	TRINUCLEOTIDE REPEAT-CONTAINING GENE 6	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000932	Cellular Component	P-body	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005654	Cellular Component	nucleoplasm	Interproscan
GO:0035195	Biological Process	miRNA-mediated post-transcriptional gene silencing	Interproscan
GO:0060213	Biological Process	positive regulation of nuclear-transcribed mRNA poly(A) tail shortening	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-