Gene detail

Detailed information of alvinactis_v1_g9037 in Alvinactis idsseensis sp. Nov. Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
alvinactis_v1_g9037	TATA-BINDING PROTEIN-ASSOCIATED FACTOR 172	chr_4	18938720	18983674	+

Gene Structure

More details in Jbrowse Sequence

CDS

alvinactis_v1_g9037

ATGGCGACAAGACTTGATCGCCTTCTGCTGTTGTTGGACACTGGGTCGACTCCAGTGACTCGCAAAGCCGCAGCATCGCAGCTCGGAGAAGTGCAAAAATTACATCCCCATGAGCTGCCAAATCTACTTGCCAGGGTCCATGCATTCCTGAAAAGTGACAACTGGGATACTAGAATTGCAGCAGGACAAGCCATTGAAGCTATTGCAAGTAATGTTCCACAGTGGAATCCACCAGGGATACAAGTAAAAGCTGAGACTCCAGACACTAGTTCAGTCAGTAGTATTGAATCAGAGCAACTTGAGTTCTCCAAGTTTGATATTAAGAGAGTTCTACAGCATGGGGAGCCACTTGTTGGATCTTCTGGTGCTGAGTATGAATTGCCTGATGACGATTACTCTGGTCTAGATCCCAAAGAAAAGTTGATGTATCAGAAAAGAATGGTTCGCAAGCGTCTGGGACTCGACATTTTACCAGGATTGGATGTTGGCATGGATAAACTCTTTGATGATGAAGACTTAATCATGAATCCTGAAGAGGTTAATAAACAAAATCCTGTGAAAAAGCAATCTTCATTTGAGAGTGCAGCAGATGTGGTTGCAGCAGAAATTGCAGCCATTAGTTCTTCATCAAAACTTAGTGCCAGGGAAAAGAACAGAGCTAAAAGGAAAGCCAAGCTTATGGCTAAACAAAGGTCAAAAGATGGCACAGATACAAATCTTGATGAGGATGATACTCCTACTGTAAAGAAGAGAAAAACAGCAAGTGTTGTTGTGGAGCAGCCTGCAGACTCTGACAAAATTGTAGTTGATAATGTAACTGATGTTGCTGCTACTTTTGAAGAGTCTGGGGAGTGGCCATTTGAAATCTTTTGTGAGGAACTTTGCCAAGAACTCTTTCATCAGTCATGGGAGATTCGCCATGGTGCAGCCACTGGTCTTAGAGAGATTGTCAAAGTCCATGGTCAAGGGGCTGGCAAGACTGTCGAAACACATGTTCAAGATTTACAGAACCAGAATATGAAGTGGATGGAAAACATGGCTGTGCATCTTCTGTGCGTTCTTGCACTTGATAGATTTGGTGACTTTGTTTCAGATGAGGTTGTGGCACCAGTACGTGAAACCTGTGCGCAGACTCTTGGTGTTGTTCTAAAACGCATGGATGTAGAGGATTGCAAGAGTGTTATGATGGCATTACTTACACTTCAACATCAGCTAGAGTGGGAGGTCAGACATGGCGGTTTACTGGGAATAAAGTATCTACTTGCCGTCAGACAGGATTTAACAGATGAGCTTGTACCCATGGTGTTGGACCCTGTTATCACTGCTCTACAAGATGATGACGATGATGTTAGAGCATTAGCTGCTTCTGCGTTATTACCTGTCATTGAAGCTGTTGTGAAACTTGCACCTAACAAGATGAAAGAACTGTTGATGACGCTGTGGGATACATTAGTAGAACTAGATGATCTAACAGCTTCTACCAATAGTATTATGTCACTACTATCTGGTATCCTGTCTTGCCCATCTGTTAATATGGACCTGTTAGGTACAGCGGGCTTGCTAACAGAGTTAGTGCCAAGGTTATGGCCATTCTTGAGGCACACAATTAAATCCGTCAGATCTGCAGCCCTTAAGACTTTTACAACACTGTTAAAGGGTTCTACAGTTGAGAAGGATTCTTCATTAGAATGTCCCTGGTTAACTCTCATTATGCAGGATGCCGTCAGGCACATTTACCAGAGATTTATCCTTGAACCAAATGCAAAATTACTTGAAATTGTTTATGAGGTTTGGTGTGAGCTGTTATCCAAATGCTCCAAGACTAGTCTGTCTGCTGCAGTGGTGCCTTTCCTGAACAGTTGGATTGGGTTTATGATGTTACAACCGTGTGTTCCTATCGACCCCTCACTCCTTATACATGCCCACCACAAACCTCGTCACAAGCTTGATAAAAGTCAAGATAAAGGTGGCTCAAGAGGGCGTAGTCAACCAGTGACGCAACCCACATCTGAAGTGATAGCTGGAGCAGCTGTTAGTATGGATGCATCAGAAAGAGAGACTACAGTCCTTAGAACCAGGCTAGCTGCTGCTAAGGGTTTAGGTCTTCTTGCTTCATATCTATCTATATATCCTGGTGGCATGATGCCTACACCCTTAGACTACCTTTTACAGACATTAGCCTATCCTCTGTCATCTACATCAGGGATACAACGAATGTCTGCTGCCCTGATCTTAGAAGAATGGGCTCTTTGTGACCAGAAATGTCAGTGTCCTAACACCATCATACAGCAGCTTCAAAAAATCTTATCTGAGCAAGTTGTTTATGATGAAGTAGCTATGCTTAACACAAGATTACAGACTGACTGTCAGGGTTTGTTGCTTGCACTAAGAGAAAGAGGGATTGATGCGACTGCAGGTGTACAGCCAGGATGTTACAATGTAGAGGCAGCGTGTCATCTAGCTACAGTAGTATTCACCGAGGCAACCAAGACATTAGGTGCATCAGATAAAAAGGTTGTGGAAGCAAAACGGTGTCACTTGAtgtccactgtcaagcagatgcagtatgaatacaataagttacacattagGGTCCAGTCGAGCGTTGCCTGTGTTCTCATTGCTATTAAAGAACTGCCTGCCAAGTTAAACCCAGTCATTAGACCAATGATGGATTCTGTGAAGAAAGAAGAACAGAATCTAATGCAGAGAAAAACAGCACAAAGTCTTGCCAGCCTTCTTGAGCTAAGCATGTCTAGATCACCCTGTCCAAACCCCAAGATTGTGAAAAACCTCTGCTCATTTGCATGTTGTGATCCATCAGTCACGCCCACTGTCAATCTGAGCTTAAGTGTCGATACAGATGAAGCCCCACCCTCCCCCTCTGTGACTGCAGCAGTGCCATCATTTAACAATACCAATAGTATCAACGAGAAAGACCATGTGCTTCAGTGTGATCAGTATAATGGAATACTGACACTGGTACAACAACATAAGAATGCTATTGCAGCCACTTCAAGACGAGGAGGGCGTGGTAAACTGTCCAGTACTTCCATTGACAATGTGTCCATGGCTACATCTGAAAACATATTGAATGACTATGGTGAGAACGGTAAAGAGTTATCAGTGCAAAGAAGAGGATCTGAGCTGTGTCTAATAAGATTAGCTAAACACTTTAGTAAAGCCATTCCCACTAGTGTTCCTAAACTATGGGATACAATGATTCAACCTTTGAACACCATGGACAACACCAGTATATTGGATGATGAGAAAGTACGGGCCAATGAAGCTGATGCTCAAACCTTAGTTAATTCCCTACAAGTGCTAGAGCTACTAATTCCTCATATTGAGGAGTCACTTCTGGCCATGGTTGTGGATTTGTTCCCAAATCTACTAGTATGTCTACAACATCCCTACTGTGCCGTGCGTCACATGAGTGCGAGATGTATGGGTGTCCTTAGTACAGCAGCCAGTCAACAAACTATGAAACATGTTATAAGTGATGTTATACCTCTCCTGGCTACAGGGGACAGTGTAGACAAGAGACAGGGTGCTGTGGAGGCTATCAACCATGTAATTGAACGCATGGCTATCAATATTGTTCCCTATGTTGTTCTACTAGTTGTACCTATACTAGGTCGTATGAGTGATCAGTGTGAAGATGTACGTCTCTTAGCAACACACTGCTTTGCCACCTCTATTCGCCTAATGCCTCTCGAGGCTGGTATTCCCGACCCACCGGGCATGTCTGAGGCCATGGTTGAGCAAAAGCAAAAAGAGCGAGTCTTTCTTGAACAGCTTCTCGACGCCAAGAAACTACAAAGTTACACTATTCCTGTTCCCATAAAGGCTGAATTAAGGAAATATCAACAAGATGGTGTGAATTGGCTTGCATTCCTCAACAAGTACAAGCTACATGGCATTCTTTGTGATGATATGGGATTAGGGAAGACCCTACAATCTATATGTATTATGGCAGGAGATCATTACACTAAACTACAAACATTTAAGGAGACTGGTAGCCTCGACTGTAAACCCCTTCCGTCCATCGTCATCTGCCCACCAACTTTGACTGGTCACTGGGTCTATGAAGTAGAGAAGTTCATTGCAAAGGAGTAtctaaaacctttgcattatacaggatctcctgttgagcgacaaagATTACGTGGCAAAGTCAAGAACCATAACCTCGTTCTGGCGTCTTATGACATCGTGAGAAATGATGGCGATTTCTTTAAATCGATAAAATGGAACTATTGTATTTTAGATGAAGGACATATTATAAAGAATGGTAAAACAAAGCTTTCTAAAGTCATTAAACAACTTCAAGCGAACAACAGAATTATTCTCAGTGGAACACCCATACAGAATAACGTGCTTGAGCTGTGGTCGTTGTTTGATTTCTTGATGCCTGGATTCTTGGGAACTGAGAAGCAGTTCCAGGCACGTTATGGCAAACCAATTATACAAAGTCGTGATGCTAAGTCTTCATCTAAGGAACAAGAAGCAGGTGCCCTTGCAATGGAAGCGCTCCATCGCCAAGTCTTACCTTTTCTTCTAAGACGCCTTAAAGAGGACGTTCTACAGGATCTACCGCCTAAAATTATACAGGATTATTACTGTGACCTTAGTCCTTtacagGTTCAGTTATACGAGGACTTCGCCAAAACACAGACCAATAAAGGATTGAGTGATTCTCTGTCTCTTGCCGATGATGGGCAGGAAAAAGAGAAATCCAAAAAAGGATCCACCCATATATTCCAAgccctCCAATATCTTCGTAAAGTGTGTAATCATCCGTTACTCGTATTGACACCAAATCACCCCGAGTATGAAAAGATTATGAAGCAACTACATGATTCTAAGATGTCCATACGAGATACACAACACTCAGCTAAACTGGTGGCATTAAAACAACTGCTGCTTGACTGTGGTATTGGTATTGGTACATCTATCGGGTCTGGTGATCTGGCCTCGGAACCTGTTGTCTCTCAACATCGCGTGTTGCTGTTTTGTCAAATGAAGAGCATGTTGGACATTGTGGAGAAAGACTTACTCCAAACGCACATGCCTAGTGTGACGTACCTACGTCTAGACGGCTCAACACCAGCGGGCTCTAGACACTCGATAGTACACAGGTTCAACAACGACCCTTCGTTTGACATGTTGCTGTTGACAACGCACGTTGGAGGACTGGGTCTAAACTTAACTGGGGCCGACACGGTCATATTCGTCGAGCACGACTGGAACCCAATGAAGGATTTACAGGCCATGGATCGAGCACATCGTATTGGACAGAAGAAAGTAGTCAATGTTTATCGATTGGTTACCAAGGGAACTCTTGAAGAGAAGATTATGGGTTTGCAGAAATTCAAGCTCACCATCGCAAACACAGTCATATCCCAGGATAACTCGAGCCTGCAAACCATGGACACTGGTCAGCTGCTTGACCTATTTACTGTCGACCCACAACACAAAGACAATGACAAGAAGCGCGAAGCAGAGTCAGGAAAGAACAAATCATCGATCAAGTCGATCTTAGAAAACATGGGCAACCTATGGGATGAAGAACAATACGAAACAGAGTATAATTTAGATAATTTTATTGAAACACTGAAATGA

Transcript

alvinactis_v1_g9037

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00176	SNF2-rel_dom	SNF2-related domain	Domain	Interproscan
PF00271	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan
PF12054	DUF3535	Domain of unknown function (DUF3535)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000330	Domain	SNF2, N-terminal	Interproscan
IPR001650	Domain	Helicase, C-terminal domain-like	Interproscan
IPR011989	Homologous_superfamily	Armadillo-like helical	Interproscan
IPR014001	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR016024	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR022707	Domain	Mot1, central domain	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR038718	Homologous_superfamily	SNF2-like, N-terminal domain superfamily	Interproscan
IPR044078	Domain	Mot1, ATP-binding domain	Interproscan
IPR044972	Family	TATA-binding protein-associated factor Mot1	Interproscan
IPR049730	Domain	SNF2/RAD5-like, C-terminal helicase domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR36498	TATA-BINDING PROTEIN-ASSOCIATED FACTOR 172	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0016887	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0017025	Molecular Function	TBP-class protein binding	Interproscan
GO:0140658	Molecular Function	ATP-dependent chromatin remodeler activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-