Gene detail

Detailed information of alvinactis_v1_g9002 in Alvinactis idsseensis sp. Nov. Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
alvinactis_v1_g9002	ACTIVATING TRANSCRIPTION FACTOR 7 INTERACTING PROTEIN	chr_4	18633162	18638063	+

Gene Structure

More details in Jbrowse Sequence

CDS

alvinactis_v1_g9002

ATGGGAGACACTGAAGAATTACCATTCAAACGAAGAAAAATCGAGGAAGTCTCGGAACACAATGGTGATCCCTTGACTGAAAGTGAACTTGATGGCAAAACGTCGAAAATCAAATCGCCTGTCAGCCTTCATATAAAACCAAACGCCATAGCACGTTTACGACAAATAGCAAAAAACAGTAACATCATCAACGCATCGCCGCAAAAACATGCTGACCAACAGAAAGATGATTCTGAGGTAACCTTGACAACTGCGAACTCACGTGACAAAAATCAAAACGAAGACCACAAGGATGGCGAGACCGCTGACAGCGAAACCAACGAGAACGCCGTCACCAGTACTGAAGGCAACAGAGACGTCATCATTTCCTCGACTGGCTCGTCACCAGCCCACTCTCCAAAGCCAGAGGATTTGTTGGTGCTTTCCACCCCACCCAAAAAAGCCTGGGCGAAAGAGAATCACAACCATGTTGACAGCAATGTAATTGACGTTTCTAAGAATCTCACCGATCGATTTGACCAGCCTGTAGAGCACAGGGTGACCAACGATGACAACCAAAGCAAAGACAAAAAGGTTGATACGGTCGTCATCGATGAAGAGAAGGAAAACACAAAGCCTGCTGAGCTAAAACCAGAAGACGCTGCAGAACCAAAACCTTCTTCGGCAGAACCACCTCCACTAAGTTTGGATACCGGTGAACTGAAAAAGGTTCTTAAAGCCATGATAGACGAAAAGTTCAAGCAAGTGGAAGATATTTATCAGAATCAAGGATCGGAGAACGAGTTACGAGAACGAATTGTGCGATTGGAAGACGAGAACAGGGACCTTCAAGAGTACGCTGCTAAACTTGAAAAGGCTGTTAAACTGCTGCTCAATAACCAAAAGAACAAGAAAGATCGGCAGAACAAGAGTGCGCAGACAGACGACGTAGTCTTGGCCAGCGTAAATACTCCAAAAACCGTCATTCCAATCGTGCTCTTGCCAACAACCATCCAAAAGTTAGCGACGCCAAAACCAACGATTCCGCCGACGCCGCCTACCCTAACTGCAGCAGcagctactcaaataccacagcaactaaaccaggtaaacatgccagggagttctacagtcgcaacatctagacctaccctaacaccagctactcaaatgccacagcaaatgaaccagataaacaagccaggaagttccacagtcgttacatctagacTCACTTCGACTCAGGCTGTCATTCCAGGCCACTCCGTTACACCAGCGTCACTTCCTCAGCGCGCAACGTATACACAACAACAGATCCGTGTAGCCAGCCCTACCGTCCAAGTCCCTCAAGGTCAAAGGTCGTTACCTCCTCAGTATCCAGCAAACGTGCCGCCATTAAGACCGAGTGTGCCGACCTCGCCCACACGGCGCCCTGCACCGGTCACAGTGACTGTACATCCTCAGACTACAACCACAACTATGATCCCATCCCCTTCCTACCCTGCACAGATTCAAAAGAGTACCTATGTTACCAATACTATAACTACTCTACCAGCACAGCAGCGACCACGACCACCTGTCTTGCACCAACAGCAGACACCGGTACAACGTATGACAAGCCCGCAGCCTATGGTTGTGTACCAGCGTCCACCTGTTCAGCAGGCGGCTCAGGTCGTCCAACCCGTTCAACAATATTCCAACTCTGTAGCAATGAGGTCACCAGCCACAAGACCCTCGCCTGTTAACAATAACTCTCCTAGCAATCAAACAAGGCCTATACAGAACAGCTTCCAACAAATACGACCACAGATACCACCAAACATGACCATATCACCAAGGGGCCAGGTAGTGGCGAATCAAGACCAAGCTAACAATTTCCAGCTTAAGGACCTACCGGGACGACCCACTGTGTCAATTGCTGTCGTCTCCAATGGAATCGTGCTGTCGTGGAATATGAACAACGCGCAGACGTCTTCGCGCATTGCCAGGTACCAGCTCTTTGCTCTTCAAGATGTTGGCTCGAACGCCGCACAGTGGAAGAAGATTGGCGTGGTGAATGCACTACCGCTCCCAATGGCCTGTACGCTTACACAATTCATGCCTGGCAATAAGTATCACTTTACCGTACGGGCACAGGACGACCACGGACGCTGTGGACCTCTTAGTGAGCCTTGTACTGTTACTCTCACATAA

Transcript

alvinactis_v1_g9002

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF16794	fn3_4	Fibronectin-III type domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003961	Domain	Fibronectin type III	Interproscan
IPR013783	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR026085	Family	Activating transcription factor 7-interacting protein	Interproscan
IPR036116	Homologous_superfamily	Fibronectin type III superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23210	ACTIVATING TRANSCRIPTION FACTOR 7 INTERACTING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003712	Molecular Function	transcription coregulator activity	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0005667	Cellular Component	transcription regulator complex	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0090309	Biological Process	obsolete positive regulation of DNA methylation-dependent heterochromatin formation	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-