Gene detail

Detailed information of alvinactis_v1_g8906 in Alvinactis idsseensis sp. Nov. Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
alvinactis_v1_g8906	SNF2/RAD54 FAMILY MEMBER	chr_4	17168601	17189821	+

Gene Structure

More details in Jbrowse Sequence

CDS

alvinactis_v1_g8906

ATGGAAGACATACAAGGACAAGAAGACAAGGAAGGAGATTGCGGAGATCAACAAGAACAAGAGACACCATCACACAAGACTACCAGCTACGGTATTGCCATTGATTCATCAAGGATTCGAGCCGTGCCAGTAGAGGAACAGTCTTCTGTTCTGAGAAACCTAGGGATTGATGTGTTTGACCACGAAGAATTTGAACAAGGTGTCCTTAGACAGGTCGACGAAGCAATAGCAGCGAAGGAATTGGAAGCAGTCGTGAAGAGCTGGGAGAAAGATTTGAAATCCGTGGATGAAGAAATAAGAATGACCCTGACAGAGATTGAACAAACAGAAAGAATTCTGAAACAAATAGAAACATCACTCACAAGCAGCTATGAATCAAGGAGACGAGCAGAGTCAGTGAGAAGACAGCGTGAGAATAAGTTGAAACAGTTAAAGAAACTTGAGGTAAGCAAAAAGTCCTTGTTCCACAAGCTAGGGCTTGACGAAGAAGGGAAAGCAGTGGAAGAGGTTATGGAGGATTCACAAGATCATCAACCAAACATCTTACAAGACAGACTAGAAATAATGAAAAAACTAGAAAAGCAGAAAGAGCAGCTAATTCAAACTGGAGAAATGACACCGTTTGGTGGCTTTGCCAGCGAAGCCAGCACTTCACACGTCTATGACCAAGAAAATCTAACAACTGATAAACACTTTGTTGAGGAAGATGATTACGTTGATACAATAACTGTCAATCAATCATCTGAGAAGGAAATAGAAAGCGATGAGTATATCCCTGACGAAGATGAACTCAAAGACAGTTGGCATGACAGGGAGACGAGCAAACCAAAAGGCGGGAAGTTGAAGAGGCCGCACGTCTCTTCTTTTAAAGCAAGCCAGGGAAACAGGCCAAATGCTGTCTACAAAGAAGATGATGCTGTTGAAGTAAGGAGGAAAAAGCCAAAGAAGGTCAAAGATCATTTTACAAAGAGTCACAAGGACGACGGGGATGAACATGGGTATAGAAAAAGAATAAGACAAGAAAGAATACAAAAATTGCTGAAAGAACAAGCATTGCTAAACAATGCTGGGGACGACAGCGAAGAAGAGACGCCTGACATGGAGTTTGACAACAGAATGAAGATTCCTGGCACAATTTGGCACAAACTGTATAAATACCAGCAAACTGGAGTCAAGTGGATGTGGGAGCTTCACTGTCAACAAGCTGGTGGCATTATTGGCGATGAGATGGGGCTTGGAAAAACTATACAAACTATTGCCTTCCTGGCAGGACTCAAATACAGTAATATAGGAACCAATAGGTCCAGgcatggtctaggaccagtgttaaTAGTGTGCCCAGTAACAGTCCTTCATCAATGGGTGTCAGAGTTTCACAAATGGGCACCTGAATTCCGCGTCGCTGTCCTCCATGATACAGGCTCCTTTCAAGGCCACAAGCAAACACTAATTAGGAAGATTTGCCATGACAACGGCGTACTAGTGACATCCTATTCAGGTATTCGTATGAATACTGACAGCCTATTGGCTAAACACTGGGATTACGTCATCCTAGACGAGGGACATATAATACGAAATCCTGATGCTGAAGTTACACTGGCTTGTAAGCAGTTTCGCACGCCTCATCGCATCATCCTATCTGGCTCACCCATGCAGAATAACCTACGAGAACTGTGGTCACTGTTTGACTTCGTATTTCCTGGCAAGCTTGGTACCTTACCAGTGTTTATGACAGAGTTCTCAGTACCTATCACTTCTGGTGGCTATGCTAATGCGTCCAATGTCCAGgtacagacagcctacaagtgcgcatgcgtactgagagacactatcaatccATACTTACTGAGAAGACTAAAAAAAGACGTGAAAATGAGTCTAGATTTGCCAGACAAAAACGAACAGGTTTTGTTTTGCCGACTGACTGAAGAACAGCGTGAGTTGTACCAGGAGTATTTAGATTCGAGGGAAGTGCAGTCCATTCTCGCTGGAAACTACAAGGTATTTCCTGGACTAATAATGTTACGTAAGATATGCAACCACCCCGACCTGACGTCACAGGCAGGGTCTCTTGTGAAAGCCAAGCAAGACAAACTTAGGGCTGAGAAAGGTCTTCCCGAGGGCCCCCTCGACGAAGACGACGGTTACGGGGACTGGCGCCGAGCTGGTAAAATGATTGTCGTGGAAGCACTTTTAAAAATGTGGAAAGCACAGAGACACCGCGTGCTCTTGTTCTCGCAAAGCCGTCAGATGCTTAACATACTCGAGACATTTGTGTCTTCACGCAGCTACACGTACCGACGCATGGACGGTGCGACATCAATATCGACTAGACAGCCTCTAGTGAACAAGTTCAATACGGACCCTTCAATCTTTGTGTTTCTACTGACCACTCGGGTTGGAGGCCTGGGGGTGAACCTAACAGGTGCTGACAGGGTCATCATCTATGACCCAGACTGGAACCCAAGCACGGACATTCAGGCCCGCGAGCGCGCGTGGAGGATTGGGCAGACTAATCCAGTTACTATCTATCGCTTACTGACATCTGGGACAATAGAAGAAAAGATTTACCACAGACAAATCTTCAAGCAATTCCTAACTAATCGTGTCCTCAAGGATCCCAAGCAAAGACGATTTTTCAAGACCAATGATCTCTACGAGCTCTTCACTCTGGACGAAAGCTACAAGAAACAGGGCACGGAAACCAGTGCCATATTTGCTGGGATGAACTGTGAAGTGAAAGTCAAGGGGTTGAAGAGACGGAAGGTAGATCCCAGGGAATCTGCGCAGCCGGTCAAGAAAAGCAGCACAGTTGCAAAACACGCTGTAAAACCGAGACCACCGAAGAAAGAGTCAAAAACGCACGACGATGGAGGCGCGTTCAGCGTCGATGCCAGGGACATCATGGAAGTCAGTCGTGCAACGAAAAGTGCTCAAGAAAAACCAACGCCTCAACAACACGATACGACGAGCAAAGATGACGAGTCTCACAGCGATGACAAACCCCTCAAGGAAGCTGATAATCACGGTAGTAACGAAGCCACTACACAGAGAGTCACTCTGAGTGAAAAATCTATTAATGATGACAAAACTAGCGATGTTGTTCCAAGTTTGGTGCAAAATATCTCGTCTGGAAAGTCAACAGCTTCGTCTTCGATGGAATATGCGCAGGAACAGGGGGAAAGTCACCCAAAAACACAAACTACCACAACGGAGCAAAGCGTTTCTGTAGATTCTCAGAGCTCTGCGGCAAAAGCCAAGACGTCTAGTAAGGAGGGTCACaagaagaagaagaagaaACTCAAAGCGTCTTCTTTGTCAGACAAGGAGTTAAGGAGACTGCTGAGGTTgaagaagaagaagaagcgacgacagaagaaaggaaAACTCGATGGCCATGAGATTGCAAACTTGGACCATCACGAGGTATATCACACGGGTACAGAGTCGAGTACCGCCGACATGGAGGCCGCTCGTGAACACTCTACAGTCAGTCAAAATGAGGACGTCATTCTCAAGACATTGTTTAAAACAGGCGGCGTACACAGTGCACTACAGCATGACGTCATTATGGATTCTGGTAACCCTGACTACACGCTGGTTGAAAGCGAGGCTAATCGTGTAGCCCAGCAGGCAGTACAGGCGTTGAAGAAATCCCGCCAGCTGTGTTTTGGTGCGAGGTCTGGGGTACCTACCTGGACAGGTGTGTCTGGACACTCAGCGTCTCCTAAACCAAAACCGATATTTGGCAAGCGAAGTAACACCAGCACAAAACAAGACTCGCCAAAGACTACAAAGCCGAGCAAAGAAGAGCCCGCGTTATTCAGCGGTGCCATCATGGGCACTCAAGCAAGTCAAGAAGACTCGGGCCCAGTCTCCTCTAGTCAATTACTCGCAAAAATGCGAGCGCGTAATAATGTATTGCCGGAGGAGACTGATACTAGTGCCCAGGTCCCCGAGACTGAGCACGATTCCTTGTTAGCGGAAATGAGCCAGTTCGTGACGTCAGGTGGGGTGGTCCCAGGCCAGGCTACCACGCAGGAAATACTCGATCGATTCAGCGCACAGTTACCTCGAGAAAATACGTCGGTTTTTCGCGCCATGCTGCGTCGTGTGTGCGATTTTAAGCGCGATAATCAAAGAGAAGGTGTTTGGACGCTGAAAAACGATTTTCGCTGA

Transcript

alvinactis_v1_g8906

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00176	SNF2-rel_dom	SNF2-related domain	Domain	Interproscan
PF00271	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000330	Domain	SNF2, N-terminal	Interproscan
IPR001650	Domain	Helicase, C-terminal domain-like	Interproscan
IPR014001	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR038718	Homologous_superfamily	SNF2-like, N-terminal domain superfamily	Interproscan
IPR049730	Domain	SNF2/RAD5-like, C-terminal helicase domain	Interproscan
IPR050496	Family	SNF2/RAD54 Helicase and DNA Repair	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45629	SNF2/RAD54 FAMILY MEMBER	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006283	Biological Process	transcription-coupled nucleotide-excision repair	Interproscan
GO:0008094	Molecular Function	ATP-dependent activity, acting on DNA	Interproscan
GO:0140658	Molecular Function	ATP-dependent chromatin remodeler activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-