Gene detail

Detailed information of alvinactis_v1_g8743 in Alvinactis idsseensis sp. Nov. Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
alvinactis_v1_g8743	TRYPSIN-RELATED	chr_4	14536114	14551083	+

Gene Structure

More details in Jbrowse Sequence

CDS

alvinactis_v1_g8743

ATGGACTCGAGTAATTGCTCATCGTCAATGAAATCCCAGGAATTTGTGCAATCAGAAGACACTGTGAGTTTGAATGCCGACGAAATTCCAAGTGCAACGAACAAAATTGACAATCATTCTGACAATAGCTCTGGAAATCTAGACATTCATTTCGATTGCCTGCCCCACGTCGTTATACTGACCATCTTATCTTATCTAAACCTGAAAGATCTTGGACGAACTGCTCGTGTCTCGAAACACCTGAATGCTTGCTGTTCCTATCCTGGATTGTGGTCTCGTGTTGATGTTAGTAATAGAAGACAAGTCAATGATGCAGTATTACTGCGAATTATAGACATCAGTAAGAACATCTCGATGCTAGATATATCTGAAACTGTCAATATCAGTGAGTATGGGCTTCGAGCTGCTCTCCAAGGGTGTCGGACTTTACAACAGTTCAAAGCTGTTCGCTGTTATAATGTTTCTGATGCATGTTTGGAGGTTGTCGGGCGTAAGTGTGTTGATCTACGAGTAATTGACCTTAGCATGTGTAAGATAACAGATGAAGGCATAGGACAGCTTTGTCTGGGCTGTACAAAACTAGAGCAAATCAAACTGAACCATTGCATCCAACTCACCAGCCACACACTGAAACACATTGCAAACAATTGCCACAAGTTGAAGTTTTTATCTGTAGAAAACAATGCCAAAATGCATGATGATGGTGTAGAGGAATTAGTGTCTAAATGCAGTCAACTGAGAAGACTTCAACTTAATTCCTGTGGAATCACTGGACATTCTATTCAGAGCATTGCGATGTACTCCCATGCGATGTCTGTCTTGGATGTCCGTTATTGCACAACAGTCAACGACGATATGGTCCAAAAACTTGTTTATGGTTGTACTAATCTAGTGATCTTGAACTTGAGTCTTTGCTTCAAAGTGACGGATGTCTCAGTGGTCCATATTTGCCGATATTGCACTCGTCTGAAGAGTATATACTTGGTACATTGTGGAATTACCGATCAAGGCCTGAAGACAATGTCTTCAAGCACATTAGGACTTCAGTGGATAGACGTTAGTTGGTGTCAAGAGATCACAGATGGAGGTGTGAGAGCACTACTACAAGGCTGCACGACTCTCGAACATTTAGGTATTGTTCGATGTGATCTTGTATCCAACGAAACCATCCATGATCTGTGTTCACGCTATCCATCAGTATATATCAGTTCATTTATAACTGAGATGGACCGTTTCTTTAAGAAAGCAGGCAACAATTCTGAAGCAATTCTTAACCAACAAGCTACACTAAGCATGTACGTGGATGGCGATTTTGGCGTGTTTTATAGCAGGGGAAGCAGGAAGAACAAGTGGCGTAACACGGGTGTGTTGACCCTGGATGGATTCCAAGGCCAGCAGCTTGAGGTGAGGCTCGTAGCATCAATTGGAAGACGCTTTAAGGGAAGCGTTGCAGTTGATAATGTGAAGATTTATGACTGTGACAATCCTAATCCAGTTACTCCAGCACCGCcaacccaagcaccttccccacccgcaccagtaacaacccaagcaccttccccacccgcaccggtaacaacccaagcaccttccccacccgcaccggtaacaacccaagcaccttccccacccgcaccggtaacaacccaagcaccACCACCACCAGGTTCTTGTGGAGTTGGTCCCAGTACAAGAATTGTTGGAGGGACAACCGCTGTCCCTGGTTCCTGGAATTGGCAGGCTCAGCTAAGAACATCATCCGGGTTTCCATATTGTGGTGGCACTCTGATTGATTCACAATGGGTGTTAACCGCTGCTCACTGTGTCGAAGGCAGCTCTGCTGGCAGCATCTTCATCAGGATGGGTGCTCACCATCGTGTCAATTCACTCGGTTCTGAGCAGGATTTCAAGGTTTTGAAGGTCATCAGCCATAGCAGTTATAACTCCCCTAAACAGTACTCACATGACATTGCCCTACTCAAGCTTGATAGGCAGGCAATACTGAATGACAAAGTCAACTTGGCATGCCTCCCCGATACCGTGGCTGCTCCTACTGACGGAACAAAGTGCTGGATCACAGGATGGGGGCGCCTTTCGTCTGGTGGTGCCACCCCGGATTACCTCCAACAAGTATCTGTACCAATCGCGAGCCGTGCACGGTGTGACAAAGCCTACCCCAATAAGATTCACGATTCTATGATCTGCGCGGGTCTTGACCAGGGCGGTATTGATTCGTGTCAAGGGGACTCGGGTGGACCCATGGTATGCGAGACTGGAGGTCGGTACTACATTCACGGCGCCACTAGCTGGGGTTATGGCTGTGCAGACGCAGGCAAATTTGGTGTGTACGCCAAGGTGAAGTACCTTCTTACATGGATCAAAGGTCAAATGGCCAAGAACTAG

Transcript

alvinactis_v1_g8743

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00089	Trypsin	Trypsin	Domain	Interproscan
PF12937	F-box-like	F-box-like	Domain	Interproscan
PF13516	LRR_6	Leucine Rich repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001254	Domain	Serine proteases, trypsin domain	Interproscan
IPR001314	Family	Peptidase S1A, chymotrypsin family	Interproscan
IPR001611	Repeat	Leucine-rich repeat	Interproscan
IPR001810	Domain	F-box domain	Interproscan
IPR006553	Repeat	Leucine-rich repeat, cysteine-containing subtype	Interproscan
IPR009003	Homologous_superfamily	Peptidase S1, PA clan	Interproscan
IPR018114	Active_site	Serine proteases, trypsin family, histidine active site	Interproscan
IPR032675	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan
IPR033116	Active_site	Serine proteases, trypsin family, serine active site	Interproscan
IPR036047	Homologous_superfamily	F-box-like domain superfamily	Interproscan
IPR043504	Homologous_superfamily	Peptidase S1, PA clan, chymotrypsin-like fold	Interproscan
IPR050127	Family	Serine Proteases (Peptidase S1 Family)	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24264	TRYPSIN-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004252	Molecular Function	serine-type endopeptidase activity	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005615	Cellular Component	extracellular space	Interproscan
GO:0006508	Biological Process	proteolysis	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-