Gene detail

Detailed information of alvinactis_v1_g8253 in Alvinactis idsseensis sp. Nov. Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
alvinactis_v1_g8253	POL PROTEIN	chr_4	6726855	6739376	+

Gene Structure

More details in Jbrowse Sequence

CDS

alvinactis_v1_g8253

ATGGCGGATGTTACAGAGCTGTCACAGAAGTTGGCTGAGCTTCAGGCGAAACTCGATGAGATGAGTCAGATGGCTACAGCTGGACCAAGTACCCAAGCACAACCCACCATCAAGGTCAGCGTGCCCAGAGAAAGGAAGCTGCGGAAGTACCAAGGCATGAGGGATGACAAGATCCTGGAGGATTGGGTGGAGGACGCAAAACGAGCAGTATCCGCCATGAAGTTGACCGGTGCTGATGCAGTGGACTTTCTCTACAACAGCCTGGAGGAGCTGCGAAGGACGAGATCGGGAGTCAATCCAAGATTTCTCCTATGCCTTGATGACCACCATGGAACAGCTGCACAAGGCATACCCGGGGCTGTTCCTGAAGGAGACCGAGTACTGAGGGACCACTTTGTGGAGAACCTACGAGATCCACAACTACGGAGGGATCTACGGAGGCTGACACGGGAGCACCCAACTAAGACATTCCATGATCTTCGGGATGAAGCTCGTCGCAGTATGGAGGAGAGCCACTTACAGTCCAGACAAGCTGCTATCCGAGAGGTGGAGGCAGAGTGCAACCAGGCCAGCGGATTCTCACCCAAGATCATCCAAGATCTCCTGGCAGGACAGAAGCTGCTTGCTGATGGACTTGAGCAACAACAAAAGATCCTGgctgaaacgcaggcagcattgtcaacccttaccatccaagtaacccaaaagagggaaaggcggtgttatcactgtggtgaccctgggcacattaaacctaattgcccaaagctgcaagaggatctggctaagaggccaaagggagagaatggcaagTTGGCGgatgacatcaagatagtcggcgcaagccctaccattgtggcgaaggttggaggagtcgcagtacggagtttagttgatactggttccatggtgacctttgttacagagtcattctttaaagacaagctgcaaccaatgcatggggatctcaggaagaggagttctattattgagcttcggggggctaatggcctagagatcccctacattggctacatcaagacaactgtggagatcgatggagtgtcagtaccaaattgtggagtattgataatgaaagacactccagccactacgcagatgcgaggaggtgcgcctggtctaattggaacgaacgttctgggccaggtgcccaagtataagaacattcttgaactacatgaacaagaaccaaaaagaaaaatagaactggatttgttaaagtggctggcacagacaaagtctgggtgccaccctttaccgaatctgacgtcacagttactggtccaccttggggaacaagtgcagttgttgaacctcggagtaccagtgcagggaaaccttacagtagctaacactcttgttgatacaaccaaatcgtgtctcgtgattcgcgttgcaaaccacactgcgaaggatatctggctgcaagccaaggacacgtattggtatcatcagggagggtgcagtggaactgttacaaagggcattataaagcccagtaaaagtgactatgcatccccaatagtgcttgtgcgcaagaagtctggtgctctgcgtatgtgtgtcgattatcggaaactcaatgcaaagaccaagcgagatgcctacccactaccacggatcgaggaatcgctggacgcactgaaaggggcaaagtacttttccaccatcgatctggcatcagcgtataaccaggtagaagtggatcctcgagaccgtcacaagactgcattcaccacaccgatgggactctatgagttcaatagaatgccgttcgggttacaaaacgccccggcaacattccaacgactgatgcaaggtgtcttcagggaagatctgctacagaagttgatggtctaccttgatgacatcatcgtcttctctcccaccatagaggaacatctaatacgcctaaaggtggtgtttcgcaagttgagtgagcatgggctgaagatagaaccaaccaagtgtcagttcttcggcaacgaagtgacctacctgggacatgtggtatcagcagatggagtctcaacagatccagaaaagacaaaagctgtaaaagagtggccggtaccagtgactgtgcgcgacttgaggtcatttcttgggtttgcatcttactaccgaagatttgtacccaagtttgcacagattgcaggtccccttcacaaagtggtagctgaactgggaagtgccggaagtaataagaccccgaagaagctaattggaaccgtttggacacaagattgtcaggcagcgttcaatcagctgaggactttacttaccacagcaccagtattggcctacccagattacacccaaccctttatactggaaacagatgcatccaacaaaggactcggggcagtgctctcgcaacagGATCCAAGGCGGTTAAAATTCTTTGACGAAGCTGGAGTGAAGTATCCCGATATAGGAACTCGCCTTTATGGACACGCTCCTATCGGCGAGCGATGCATCGAAGTTGTGAGAAAAGTAGAATCTCCCAACTCGACGGTCAACTTGATTGTTTCACTGAATGGGCCAGAATATTACGATGTAATTGCTGGAGCGACTAACAACATCGAATTTTTGCAATTCTTTACCAGGGGATTAAATGCTGTGAACCCAATAACTCTGCGTCCTGTTCTTCAAACTGGGGATATTGTAATCATGGACAACCTCTCTGTTCATCACTTCGATGCAGGCGAAGTTCTAGAGGAATTCCTCGGAGACATGAAGTTGGCTGAGCTTCAGGCGAAACTCGATGAGATGAGTCAGATGGCTACAGCTGGACCAAGTACCCAAGCACAACCCACCATCAAGGTCAGCGTGCCCAGAGAAAGGAAGCTGCGGAAGTACCAAGGCATGAGGGATGACAAGATCCTGGAGGATTGGGTGGAGGACGCAAAACGAGCAGTATCCGCCATGAAGTTGACCGGTGCTGATGCAGTGGACTTTCTCTACAACAGCCTGGAGGGAGCTGCGAAGGACGAGGTAAGGCTGAGGCCAGCCACAGAGTGGAGTACCTCTGATGATGTGTACCAGATTCTCCGGGACACTTTTGGGGAGAAACTGACAAAAACTCAACTACTGCAGAGGTTCTTTGGTCGTCATCATAAAGATCGGGAGTCAATCCAAGATTTCTCCTATGCCTTGATGACCACCATGGAACAGCTGCACAAGGCATACCCGGGGGCTGTTCCTGAAGGAGACCGAGTACTGAGGGACCACTTTGTGGAGAACCTACGAGATCCACAACTACGGAGGGATCTACGGAGGCTGACACGGGAGCACCCAACTAAGACATTCCATGATCTTCGGGATGAAGCTCGTCGCAGTATGGAGGAGAGCCACTTACAGTCCAGACAAGCTGCTATCCGAGAGGTGGAGGCAGAGTGCAACCAGGCCAGCGGATTCTCACCCAAGATCATCCAAGATCTCCTGGCAGGACAGAAGCTGCTTGCTGATGGACTTGAGCAACAACAAAAGATCCTGGCTGAAACGCAGGCAGCATTCTGCAAGAGGATCTGGCTAAGAGGCCAAAGGAGAGAATGGCAAGTTGGCGGTAAAAGCcaaccctccacggcagtgagccatgtcgtggaggagaagcgtggtggctctgatctcttgaaggatgacatcaagatagtcggcgcaagccctaccattgtggcgaaggttggaggagtcgcagtacggagtttagttgatactggttccatggtgacctttgttacagagtcattctttaaagacaagctgcaaccaatgcatggggatctcaggaagaggagttctattattgagcttcggggggctaatggcctagagatcccctacattggctacatcaagacaactgtggagatcgatggagtgtcagtaccaaattgtggagtattgataatgaaagacactccagccactacgcagatgcgaggaggtgcgcctggtctaattggaacgaacgttctgggccaggtgcccaagtataagaacattcttgaactacatgaacaagaaccaaaaagaaaaaatagaactggatttgttaaagtggctggcacagacaaagtctgggtgccaccctttaccgaatctgacgtcacagttactggtccaccttggggaacaagtgcagttgttgaacctctcggagtaccagtgcagggaaaccttacagtagctaacactcttgttgatacaaccaaatcgtgtctcgtgattcgcgttgcaaaccacactgcgaaggatatctggctcaagccaaggacacgtattggtatcatcagggagggtgcagtggtccagacaggagagcagttggagttctatcaggaaagtaacagagtaactgtctcttgcaacctcagtgctagcccacagcagccaccctcacgggaagctgagggcaccgtacgatggcagaggaagcaagagctcccaaacgggattactctggataactttcccgggacggcacaacaactggaggaggctctggctctgttcaccgaatacaaggaagtgtttgcaactaataaggaagacctggggtgcacatcgacaacatatcatcggatccatacggaggatgatgttcctgtcatggagcgccacaggaggataccacccaatcaatttcaagaagtacagcaacatcttcaggaactgttacaaaagggcattataaagcccagtaaaagtgactatgcatccccaatagtgcttgtgcgcaagaagtctggtgctctgcgtatgtgtgtcgattatcggaaactcaatgcaaagaccaagcgagatgcctacccactaccacggatcgaggaatcgctggacgcactgaaaggggcaaagtacttttccaccatcgatctggcatcagcgtataaccaggtagaagtggatcctcgagaccgtcacaagactgcattcaccacaccgatgggactctatgagttcaatagaatgccgttcgggttacaaaacgccccggcaacattccaacgactgatgcaaggtgtcttcagggaagatctgctacagaagttgatggtctaccttgatgacatcatcgtcttctctcccaccatagaggaacatctaatacgcctaaaggtggtgtttcgcaagttgagtgagcatgggctgaagatagaaccaaccaagtgtcagttcttcggcaacgaagtgacctacctgggacatgtggtatcagcagatggagtctcaacagatccagaaaagacaaaagctgtaaaagagtggccggtaccagtgactgtgcgcgacttgaggtcatttcttgggtttgcatcttactaccgaagatttgtacccaagtttgcacagattgcaggtccccttcacaaagtggtagctgaactgggaagtgccggaagtaataagaccccgaagaagctaattggaaccgtttggacacaagattgtcaggcagcgttcaatcagctgaggactttacttaccacagcaccagtattggcctacccagattacacccaaccctttatactggaaacagatgcatccaacaaaggactcggggcagtgctctcgcaggaacaggttttgctcgaaattcacgaaatttctcacagGCGGTTAAAATTCTTTGACGAAGCTGGAGTGAAGTATCCCGATATAGGAACTCGCCTTTATGGACACGCTCCTATCGGCGAGCGATGCATCGAAGTTGTGAGAAAAGTAGAATCTCCCAACTCGACGGTCAACTTGATTGTTTCACTGAATGGGCCAGAATATTACGATGTAATTGCTGGAGCGACTAACAACATCGAATTTTTGCAATTCTTTACCAGGGGATTAAATGCTGTGAACCCAATAACTCTGCGTCCTGTTCTTCAAACTGGGGATATTGTAATCATGGACAACCTCTCTGTTCATCACTTCGATGCAGGCGAAGTTCTAGAGGAATTCCTCGGAGACATGGGAATTGAATTGATATACACACCTGTGTATTCACCCGACCTCGAGATGTGTTTCAATATGTGA

Transcript

alvinactis_v1_g8253

Protein

alvinactis_v1_g8253

MADVTELSQKLAELQAKLDEMSQMATAGPSTQAQPTIKVSVPRERKLRKYQGMRDDKILEDWVEDAKRAVSAMKLTGADAVDFLYNSLEELRRTRSGVNPRFLLCLDDHHGTAAQGIPGAVPEGDRVLRDHFVENLRDPQLRRDLRRLTREHPTKTFHDLRDEARRSMEESHLQSRQAAIREVEAECNQASGFSPKIIQDLLAGQKLLADGLEQQQKILAETQAALSTLTIQVTQKRERRCYHCGDPGHIKPNCPKLQEDLAKRPKGENGKLADDIKIVGASPTIVAKVGGVAVRSLVDTGSMVTFVTESFFKDKLQPMHGDLRKRSSIIELRGANGLEIPYIGYIKTTVEIDGVSVPNCGVLIMKDTPATTQMRGGAPGLIGTNVLGQVPKYKNILELHEQEPKRKIELDLLKWLAQTKSGCHPLPNLTSQLLVHLGEQVQLLNLGVPVQGNLTVANTLVDTTKSCLVIRVANHTAKDIWLQAKDTYWYHQGGCSGTVTKGIIKPSKSDYASPIVLVRKKSGALRMCVDYRKLNAKTKRDAYPLPRIEESLDALKGAKYFSTIDLASAYNQVEVDPRDRHKTAFTTPMGLYEFNRMPFGLQNAPATFQRLMQGVFREDLLQKLMVYLDDIIVFSPTIEEHLIRLKVVFRKLSEHGLKIEPTKCQFFGNEVTYLGHVVSADGVSTDPEKTKAVKEWPVPVTVRDLRSFLGFASYYRRFVPKFAQIAGPLHKVVAELGSAGSNKTPKKLIGTVWTQDCQAAFNQLRTLLTTAPVLAYPDYTQPFILETDASNKGLGAVLSQQDPRRLKFFDEAGVKYPDIGTRLYGHAPIGERCIEVVRKVESPNSTVNLIVSLNGPEYYDVIAGATNNIEFLQFFTRGLNAVNPITLRPVLQTGDIVIMDNLSVHHFDAGEVLEEFLGDMKLAELQAKLDEMSQMATAGPSTQAQPTIKVSVPRERKLRKYQGMRDDKILEDWVEDAKRAVSAMKLTGADAVDFLYNSLEGAAKDEVRLRPATEWSTSDDVYQILRDTFGEKLTKTQLLQRFFGRHHKDRESIQDFSYALMTTMEQLHKAYPGAVPEGDRVLRDHFVENLRDPQLRRDLRRLTREHPTKTFHDLRDEARRSMEESHLQSRQAAIREVEAECNQASGFSPKIIQDLLAGQKLLADGLEQQQKILAETQAAFCKRIWLRGQRREWQVGGKSQPSTAVSHVVEEKRGGSDLLKDDIKIVGASPTIVAKVGGVAVRSLVDTGSMVTFVTESFFKDKLQPMHGDLRKRSSIIELRGANGLEIPYIGYIKTTVEIDGVSVPNCGVLIMKDTPATTQMRGGAPGLIGTNVLGQVPKYKNILELHEQEPKRKNRTGFVKVAGTDKVWVPPFTESDVTVTGPPWGTSAVVEPLGVPVQGNLTVANTLVDTTKSCLVIRVANHTAKDIWLKPRTRIGIIREGAVVQTGEQLEFYQESNRVTVSCNLSASPQQPPSREAEGTVRWQRKQELPNGITLDNFPGTAQQLEEALALFTEYKEVFATNKEDLGCTSTTYHRIHTEDDVPVMERHRRIPPNQFQEVQQHLQELLQKGIIKPSKSDYASPIVLVRKKSGALRMCVDYRKLNAKTKRDAYPLPRIEESLDALKGAKYFSTIDLASAYNQVEVDPRDRHKTAFTTPMGLYEFNRMPFGLQNAPATFQRLMQGVFREDLLQKLMVYLDDIIVFSPTIEEHLIRLKVVFRKLSEHGLKIEPTKCQFFGNEVTYLGHVVSADGVSTDPEKTKAVKEWPVPVTVRDLRSFLGFASYYRRFVPKFAQIAGPLHKVVAELGSAGSNKTPKKLIGTVWTQDCQAAFNQLRTLLTTAPVLAYPDYTQPFILETDASNKGLGAVLSQEQVLLEIHEISHRRLKFFDEAGVKYPDIGTRLYGHAPIGERCIEVVRKVESPNSTVNLIVSLNGPEYYDVIAGATNNIEFLQFFTRGLNAVNPITLRPVLQTGDIVIMDNLSVHHFDAGEVLEEFLGDMGIELIYTPVYSPDLEMCFNM*

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00078	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF13358	DDE_3	DDE superfamily endonuclease	Domain	Interproscan
PF17919	RT_RNaseH_2	RNase H-like domain found in reverse transcriptase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000477	Domain	Reverse transcriptase domain	Interproscan
IPR001878	Domain	Zinc finger, CCHC-type	Interproscan
IPR021109	Homologous_superfamily	Aspartic peptidase domain superfamily	Interproscan
IPR036397	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR036875	Homologous_superfamily	Zinc finger, CCHC-type superfamily	Interproscan
IPR038717	Domain	Tc1-like transposase, DDE domain	Interproscan
IPR041577	Domain	Reverse transcriptase/retrotransposon-derived protein, RNase H-like domain	Interproscan
IPR043128	Homologous_superfamily	Reverse transcriptase/Diguanylate cyclase domain	Interproscan
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR051320	Family	Viral Replication and Maturation Polyprotein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR33064	POL PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-