Gene detail

Detailed information of alvinactis_v1_g7581 in Alvinactis idsseensis sp. Nov. Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
alvinactis_v1_g7581	DEHYDROGENASES, SHORT CHAIN	chr_3	31823806	31827124	+

Gene Structure

More details in Jbrowse Sequence

CDS

alvinactis_v1_g7581

ATGGCGGATCCTATTCGATTCGACGGTCGTGTGGTTTTGGTAACTGGAGCAGGTGGGGGACTCGGTAAGGAATATGCATTGGCATTTGCAGCAAAAGGAGCTTCAGTTGTGGTGAATGACTTGGGAGGTGACCCAAAAGGGGACGGGAAGAGCTCCCGTGCAGCTGACTTGGTTGTGGATGAAATTCGAGCCAAGGGAGGCAAGGCCGTGGCTGATTATAACTCTGTAGAGGATGGCGATAAGGTCGTACAGACAGCTCTCAATGCCTTTGGTAGAATAGATATCGTGGTCAATAACGCCGGGATCCTACGGGACAAGACTGTTGCGAGTATGAGTGATTTAGATTGGGATTTGGTTCTCCGTGTTCACCTGCGAGGCTCATTCCTTGTTACTCGAGCTGCCTGGCCGCATATGAAAAAGCAAAAATATGGCCGCATAATCATGACCTCCTCAACATCTGGAATATTTGGCAATTTTGGTCAGGCTAACTATGGCGCAGCTAAGTTGGGGCTACTTGGTCTCAGCAATACTCTATCATTAGAAGGTGCCAATTACAACATCCAGTGTAATGCCGTAGCACCCATTGCAATCTCTAGATTGACACACTCCATTATGCCACCTGATATGGCCAAAGAGTGTAATCCAAAGCATGTAGTACCACTAGTCTTGTACCTTTGTAGTGATAACTGTGATGAAACCGGTGGGCTTTTCCAGAGCATTGCTGGTTGGCATGCCAAGTTAAGGTGGCAGCGAACCAAAGGGGCTATACTCCACCATGCAGGTATCGAAGTCACTCCTGAGATGGTGCGAGATAGATGGGATGAGATAACCGACTGGACCAATGCCGACAGTCCAATGCCTCAAGATGCAATAACAAAAACAACAGAGATAATAGAAGCCAAGAAGAATGCTGGTGATGGTACAAGAGAACAAGGTGCTGAAAACACAGCATCATTTACATACACACACAGAGATGTGATCCTCTATGCATTAGGGGTTGGTGTATCAAGTCAGAGTGACTATTCACATTTGAAGTTCTTGTATGAAGGCCATGAAGATTTTAGTGTGCTGCCGACATTCGGGGTGATTGCCTCTCAGGGTGGAATGTCTGGATTTATGACATCTGATGCAATGAGAGGAATTTCATTTGACCCAACAAGATTGCTTCATGGGGAGCAGTACACTGAACTCTTCAAACCATTTCCAACATCTGGTACAGTTGTCTCAAAAGCTAGAGTTGGAGATATCATGGATAAAGGCAAAGGAGCGTTAGTACTGCTTGATATCACTACATATGATGAACAAGACGAACCCATTTGTCTCAATCAGTTTTCCCTCTATCTTGGAGGTGCTGGTGGATTTGGTGGGAAAAGAAGCTCTGATAAGGTGATACCATTAGCAAAGGCTCCTTCAAGGAACCCAGATGCTACAATCCAAGAGAAAACTGGTTTGACACAAGCTGCATTGTATCGACTTAGTGGTGACTATAACCCTCTTCATGTTGATCCAGCTTTTGCACAAATGGGAGGCTTCTCTTCCCCCATTCTCCATGGTTTATGTTCTTATGGTATTGCTTGTCGTCATGTCCTTAAACAGTTTGCTGGTAACGATGTCACCAAGTTTAAAGCAATGAAGGCACGCTTTTCCAAACCTGTGGTTCCTGGTCAAACCCTACAGACCAACATGTGGAGAGAAGGAAATCGTATTCATGTTGAATGCAAAGTAGTTGAGAATGGCAATGTTGTCCTGACAGGGGGATACGTAGACTTGAAAAATATTCCTAAAGACATACCAAATGTAAGTGCCTTACTCAACAAACCTGTGACATCAGGACTAAAAAGCCAAGCTCTGTTTGAAGAACTGAAGAAGCGCATCTCAGCTCATCCTGATCTCATGAAACAAATCAATGGAATCTTCCAGTGGAACATCACTAAAGATGGCAAGACTGCGGGTCAATGGACAATCGACCTCAAGACTGGCAGTGGTTCTGTTATTCCAGGAACTTCACCAGGAATCAAACCTGAGTGTACCATTACCGTGTCCGATGATGATCTGATAGGCATTGCTACAGGGAAACTCAACCCGCAACAGCTATTCATGAAAGGAAAGTTGAAGGTGACAGGTAATGTTATGCTGACCACCAAACTGAATAAGCTATTCAATGACCAATCAAAGATGTGA

Transcript

alvinactis_v1_g7581

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00106	adh_short	short chain dehydrogenase	Domain	Interproscan
PF01575	MaoC_dehydratas	MaoC like domain	Domain	Interproscan
PF02036	SCP2	SCP-2 sterol transfer family	Domain	Interproscan
PF13452	MaoC_dehydrat_N	N-terminal half of MaoC dehydratase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002347	Family	Short-chain dehydrogenase/reductase SDR	Interproscan
IPR002539	Domain	MaoC-like dehydratase domain	Interproscan
IPR003033	Domain	SCP2 sterol-binding domain	Interproscan
IPR020904	Conserved_site	Short-chain dehydrogenase/reductase, conserved site	Interproscan
IPR029069	Homologous_superfamily	HotDog domain superfamily	Interproscan
IPR036291	Homologous_superfamily	NAD(P)-binding domain superfamily	Interproscan
IPR036527	Homologous_superfamily	SCP2 sterol-binding domain superfamily	Interproscan
IPR039569	Domain	N-terminal of MaoC-like dehydratase	Interproscan
IPR051687	Family	Peroxisomal Beta-Oxidation Enzymes	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45024	DEHYDROGENASES, SHORT CHAIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0016491	Molecular Function	oxidoreductase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-