Gene detail

Detailed information of alvinactis_v1_g7473 in Alvinactis idsseensis sp. Nov. Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
alvinactis_v1_g7473	HUNTINGTIN INTERACTING PROTEIN 1	chr_3	30326455	30350204	+

Gene Structure

More details in Jbrowse Sequence

CDS

alvinactis_v1_g7473

atgcacgacctacaagcggacacacagctagaaagtatggtacagcagatcccagatgatggccctgaagttcgtccacaggtacaagtcttagctacagaagtggggttgaagcaagccgacctcggtacggggagattcaccaggttctctggctggccatcattagtgagagcggtctccaagatcataacagttgcaaggctgtggcacaaagacaccaacgttcagacacaaaagacaagttcgaaagcacgcactatggaaaaggcgagtataacaatcttcagaaacatccaacaagaatcctacaaggaagagatgcagtgtctgtcgacgggcaagaagttaccaaggaacagcaccctgctgaagctcaaccctactatcagtgctgatggtctcctagttgtaggtggtcgcttggacaaagccacagacctcactgatgaagagtgtcatccaattatccttccaagctctcatcacgccaccatcctgctggtcaagcatctacacacaaaggtacagcaccaaggacgacactttaccctcggcataattagaagtagtggcttttggatcgtcggagtcagacgactcgtaagcagcatcatagataagtgtgtaaagtgcaagaagctgagaggacaagtacagcaacaactgatggctgacctaccggcggaacgcttgaccccatcaccaccctttacttatgtggggctggacgtgtttggaccgtgggaagtggttgcaagacgcacaagaggtggtttagcccacagcaaacgatgggcagtcatatttacttgtctaacaactagagccatccatatagaagtaatcgagtccatggacacctcttgcttcattaacgcaatgaggaggtttttagccttacgaggaccagcaatccagctgcgttctgatcacggatctaacttcgtgggagccttcaacgaactgcagaaaggtcaagcggtcaaagcagttcacgattatttagctacagagaactgtgagtgggtcttcaaccctccacacgcatctcatgcgggtggtgtctgggaacgcatgattggagtagtaagaaggattcttgactccatgatcactacagttgcagccaaacatctcactcatgaagtcctaacaacactgatggcagaaatatcagccatagtcaatggaaggcccctggtacctgtttcttgtgaccctatggcaccagaagttcttacaccatccaccatcctaacactaaaaccgcgaacgctgaaagctgctcccggtgactttgacagtaaggacctccacagcaagcaatggcgacaagtacaacaactggctaaccagttctgggcaagatggaggagagaatatatccacaccttgcaagagagacagaagtggcactatgaaagccccaacctacaagtgggacacttggttctccttcgtgacaaggaagtctccagaaattgttggccaatggctcggattacacaagtgtttaaagctgctgatggcaaagtccgcaagGCTCTTGAAGATTCTTTAAAATATCGAAAGCTTCTTGAAGATATGAACAAATTTTGGGAACTCTCACCCAAAGGAGGATATGGTGTCCTGATTGCTACATATCTCAAAGTACTGCTGGCCAAACTGGAGTTTCATAAGAAGAATACCTATATTCCTGGTAACCTAATGATCAGTAAAGATGGCCGAGTGCAATATGCTAGTACAGATGTTAATGACTATTTTCAGTTGTCTGTAGAAGTGTTTGATTACTTGGATACATTAATTGGTTTAGAGAAAAAAGTGTTTTCTACCCTGGACCGTTATCACTCCAATTCTCAGATATCGGCTGTCCAATGTAGAATATGTCCCTTTCCTGTCATTGTTCAGGAATGTTCTGGTCTTTACACCATTTCTGTTGATCTTATGTACAGACTGCATTCAAGTTTACCTGCTGATACTCTTGAAGGACACAGAGAAAGGTTTTATGAACATTTCAAAGATTTGAAGAGTTTCTATTTTGATGCTGGTAACATGGCTTATGTTAAGGCTTTAGTTATAGTTCCTACACTACCAGAGAACCCACCATCATTTATACCATCTGGTGGTCCAGGGATCCTCAAGAGATCTACCAGCTATGAAGGCCCTAAAGCAGAGAAGATGCCAGATCCCAAACGACAAAGTTTGATGGAACCTCTTAATGTTTCTATGACAGAATCAACACCAGAAGATGATCTATTTGGATTTTCTTTGCAAGATGGACCAACACCCCCAGCACGTCTTGAGAGTTTACATGACAGTAGAGATACACTTATCGCACAACTCAGAGAGGAAATATTGCAGTTGAGGCAAGAACTACACACACAAAAATCTTATACTGAAGCTATTGAGGAATCTCTAAGACAAGACATAGCTAGGCTTGAAGATGAACTTGCCGAACAGAAGAACATTAGTGATATGACAACAGAGGAAAATACCTCTTTAaagaaggagcttgaagaaaaagaagaaggaaagaaAGTTGCCAGTGAAGACAAATTTTCCAAACTCAAAGTGATGTACAGCAAGTTACGAGAGGAGCACATCCATCTGTTAAGAGGGAATGCTGAAGTGAAACAGAAACTTAGTGCCGCCGATAAGGCTAGAAAAGGCATAACAGAAGAGGCTGAAGAATTGAAGCAGGAACTCCAAAACAAGGAAGCTCAAATAGAACTGATTGAGAAACAGTTTGAACAAGAAGAACAGGCAAAACAGCTTGCTGAATATACTGTCGCAAATCTAACAAAAGATCACGGTAACAAGGCTGTTGAGTTCTCTACACAACTACAAGCAGCGGTCAAAGCTACAGAAGAAATGGAAACTGCTAGAATGGGAAAAGAAATGAAAATAAAAGAATTGGAAGTTCTGCTTTCTTCAGGTCAAGTAGAAATATCTGAAACATCCATTCAAaagaaacaagaggaagaaagaagaagaatagcagaggaaacgattgacaaggaaagaaaagaacatgaaAACATGGTCTCTACTTTAAACGTGGAAATAGATAACTTAAAAGGTCAAAATCAAAGTGTAGAAGAAGCCAGGAAAAAGGCTGAAGAAACGATAGAATTAGAAAGAACAAAACTTGAACAACAGATATCCATACTGAATACTCAACTCAAAGATTCAAAATGTCAAAGTGAAAGCTCAGAGCAAGAAAAGAAAAAAGCTGAAGAAACAATAGAATTAGAAAGAACAAAATATCAACAACAGATTTCCACACTTAATATTGAGTTAAATAACAAAAATAATCAGAATGAAGGCTTAGAGGAAGCAAAAAAGAAGGCTGAAGAAACGATAGAATTAGAAAGAACAAGATACAGTGAACAGACTGAAGAGCAAGAGAAGAAGACTAAAGAAAATCAGTTAAAAAATAACCAGAATATTGTTGCTTTGTGTATTGATGAAGGCAAGAAAATCATTCAAGATTGTCTTGATCAGTTTGATAATCCACATCATACTTCTACGACATGTACAGCAGAATACCTACTCAGCCGGTTGGAAGGTATTACCGTCCATCTTGACCGCGTAACCACAAGCTTTTCCTCATATCAATCAAACAATGAAGAGTTTCTACCTCTTATGTCATTCATATCTTCCTATTCACATCGTCTTGGCGACTGCTTGCTTAATGCCCAGGCCACCGCACACATGGCTCCATCTAAAGAAGCCCAAGACTTGAGAACCAATAGTGAATCTGCTGGTAAGATGTCGCTGGAACTGTTGGAAGCCATGAAAACTAAGGAAATCGATGTCCAGGTGCTTGCTGACAAGGTGAATCAGATCAAGAAAAACCTTGATGGCATCTCTAAGGTGGCTGAGGCTCTTGCTCCTAAAGAAAAAGACAGTGCTGAAACCATTGGTTCTGAGGTTGACAAGGAGATCAATGCTACAGCTGAGCTTGTAGCAGACGCCGCACTTCGAATAGAGGAAATGTTGAACAAAACCCGAGAAAAATATTCAGGAGTACAGCTTGAAGTTCATGGAAGGATCTTGGATTCTTGCACATCGTTGATGCAGGCCATCAAAGTGCTCATCATTAAATCGAAAAGTCTCCAAGAAGAGATTGTTGGAGAGGGCAAGGGTACGGCAACTGCTCGTGAATTCTACAAACGTCATCATAGATGGACAGAAGGGCTCATTTCTGCAGCCAAGGCTGTAGGCTGGGGAGCTAAAGTACTAGTTGATTCAGCCGATAAAGTCGTACAAGGACAAGGTAAATTTGAAGAAATCGTGGTGGCGTCCAATGAAATCACTGCCAGCACCGCACAGTTGGTTGCTGCATCGAGAGTTAAAGCACAACATGGAAGCTCAAAACTTTCGTCGCTACAAGTCGCCTCTAAAGATGTGGTCGAATCAGCAGCAAGTGTAGTAGCATCGGTTAAAACTGGTGCAGAGATGATTGATGATAGCAAAACTGTACCGGACTACTCCAAACTAACCCTTACACAAACTAAGCGAATGGAGATGGATTCACAAGTACACGTCTTAGAATTAGAGAGTAACTTGACCAAAGAAAGGCAAAAACTTGGTAAACTGAGGCGCATCCATTATCAGCTCGCTGCTGCTGAGGAAGACTCATCTAACCAATAA

Transcript

alvinactis_v1_g7473

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01608	I_LWEQ	I/LWEQ domain	Family	Interproscan
PF07651	ANTH	ANTH domain	Repeat	Interproscan
PF18701	DUF5641	Family of unknown function (DUF5641)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001584	Domain	Integrase, catalytic core	Interproscan
IPR002558	Domain	I/LWEQ domain	Interproscan
IPR011417	Domain	AP180 N-terminal homology (ANTH) domain	Interproscan
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR030224	Family	Sla2 family	Interproscan
IPR035964	Homologous_superfamily	I/LWEQ domain superfamily	Interproscan
IPR036397	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR040676	Domain	Domain of unknown function DUF5641	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10407	HUNTINGTIN INTERACTING PROTEIN 1	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003779	Molecular Function	actin binding	Interproscan
GO:0005543	Molecular Function	phospholipid binding	Interproscan
GO:0006897	Biological Process	endocytosis	Interproscan
GO:0007015	Biological Process	actin filament organization	Interproscan
GO:0015074	Biological Process	DNA integration	Interproscan
GO:0030136	Cellular Component	clathrin-coated vesicle	Interproscan
GO:0030276	Molecular Function	clathrin binding	Interproscan
GO:0030479	Cellular Component	actin cortical patch	Interproscan
GO:0032051	Molecular Function	clathrin light chain binding	Interproscan
GO:0035615	Molecular Function	clathrin adaptor activity	Interproscan
GO:0043325	Molecular Function	phosphatidylinositol-3,4-bisphosphate binding	Interproscan
GO:0048268	Biological Process	clathrin coat assembly	Interproscan
GO:0051015	Molecular Function	actin filament binding	Interproscan
GO:0080025	Molecular Function	phosphatidylinositol-3,5-bisphosphate binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-