Gene detail

Detailed information of alvinactis_v1_g7284 in Alvinactis idsseensis sp. Nov. Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
alvinactis_v1_g7284	S-ADENOSYL-L-METHIONINE-DEPENDENT TRNA 4-DEMETHYLWYOSINE SYNTHASE	chr_3	27499090	27532722	-

Gene Structure

More details in Jbrowse Sequence

CDS

alvinactis_v1_g7284

ATGGCGGCCAACGGAGAAACATTTCGAAATCTGTTGCGGCTTTTAGTCGCTATAATTTATCTTACCTTGCACGTTAAAGGGGatgATGAGGCAATACATGTACATCCAGAATGGTCAGAACAAGTACAATGGTGGTTATTGGTAGGGAAGACCATAGTCAGTGTAATAGTAGGGGCAGTAGGTATGATATGGTTCTTGTCAGCAATGAAAAGACGATATTCAGAGCAGCAGACATTGCTCAAGGAGAATGATGTAAAAATAGCTGACAATAAACCAACAGTCAAGATATTCTATGGGACACAGACTGGAACTGCAAAAAAATTTACAGAATTATTTCATGAGAAGGCTGTTAAGCAAGGAATTAACTGTGTTATTGTGAATTTAAAAGATTTTGAACCAGAAGATAATCTTCCAAACGAGAAATGTACTTGTATTTTTGTTGTAAGTACATATACTGATGGTAAGCCATCCAAGGATGCTGTGTGGTTCTGTAAATGGTTGGAAGAATCTTCAAATGATTTCCGTGTTTCCAAGTCTCTCCTTCAAGGAGTAAAGTATGCTGTCTTTGGTCTTGGCAACTCTTTGTACAAAGATCACTTTAACAAGACTGGTAAAAACATTGATGAGTGGATGAGTCTGTTAGGTGCTCAGTCTGTGCTTCCACTCACACTTGGTGATGAAAATcatgtcaatagtcaaaatggagGTTTGGAGGCTGACTTTCAAGCTTTCTGTTCACAATTCCTTGGTACTTTCAAAATTCCAAGTGTATGTGCTTGTGGGAGAACGGAGCAATGCTGTGAAGACAGCAATGATATTCAAAATGTAGAAACCACCGTGCAAGATTCACAAGAGGAAATGTACGAAAGCTCCAGTGAAGATGACAATGGTGATGACTCAAATGAGAAAAAAGAAACGAAGGTGTCAGGAATGGTGGATGTAGAGGACTTGGGACCTGTCTTTAGAAAGATGAAAAAAGAGAATGGACTATCAGCAAATGGATTTGGACCTAAAGAGATGGTCACACCAGCCATTAGAGCGTCCCTCACAAAACAGGGCTACAAAATTATTGGTTCACATTCAGGAGTTAAGCTTTGCCGTTGGACAAAGTCAATGATGCGTGGCCGTGGTGGTTGCTACAAACACACATTTTATGGAATAGAGAGTCATCGCTGCATGGAGACCACGCCTAGCTTAGCCTGTGCCAACAAGTGTATCTTCTGTTGGAGACATCACACCAACCCAGTTGGCACTGAGTGGACATGGCAGATGAATGAACCAGAGTTGATAGTTGATGGAGCCATGCAGAATCATTATAAGATGATCAAAGAATTTAAAGGTGTACCTGGTGTAAAGCTTGAAAGGTTTAATGAAGCAATGAAAATCAAGCACTGTGCTCTATCCCTTGTTGGTGAACCTATTATGTATCCCAAGATAAACGAGCTTGTAAAACTGCTTCATAGTCATGAAATATCCACATTCCTTGTTACAAATGCTCAGTTTCCAGATGCTATAAgGGATCTTTTGCCAGTAACTCAACTCTATGTGAGTGTAGATGCCAGTACAAAAGACAGCTTGAAGAAGATTGACAGGCCACTTTTTAGGGATTTCTGGCCACGTTTCTTGGATAGTTTGAAAGCCTTGTCAGATAAGGGACAAAGAACAGTTTATCGACTGACTTTAGTGAAATCATGGAACACTGAGGAACTGCAGAATTATGCTGATCTTGTGTCGCTTGGTAAACCAGACTTTATTGAAGTTAAGGGTGTAACATACTGCGGAGATTCAAAAGCATCATCGCTGACAATGGCTAATGTCCCCTGGCATCATGAGGTTATTGGTTTTATTGAGAAACTTGCAGACCTTTTACCAGACTATGAACTGGCCTGTGAACATGAACACTCAAACTGTCTGTTGCTAGCACACAAAAAGTTCTTCTTTAACAATCAGTGGCATACCTGGATAGATTACACTGCATTTCACAAGTTGATGAAGACACATGAACAAAGTCAAGGAAAAGCAACATTCTCATCCATTGATTATATGGCTGCAACTCCAGAATGGGCAGTGTTTGGTAATCAACACAGAGGATTTGACCCTGTTGAAACTCGATGGTACAGAAAGAACAGGAAAGATGTTagtggttgctaa

Transcript

alvinactis_v1_g7284

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00258	Flavodoxin_1	Flavodoxin	Domain	Interproscan
PF04055	Radical_SAM	Radical SAM superfamily	Domain	Interproscan
PF08608	Wyosine_form	Wyosine base formation	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001094	Domain	Flavodoxin-like	Interproscan
IPR007197	Domain	Radical SAM	Interproscan
IPR008254	Domain	Flavodoxin/nitric oxide synthase	Interproscan
IPR013785	Homologous_superfamily	Aldolase-type TIM barrel	Interproscan
IPR013917	Domain	tRNA wybutosine-synthesis	Interproscan
IPR029039	Homologous_superfamily	Flavoprotein-like superfamily	Interproscan
IPR034556	Family	S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13930	S-ADENOSYL-L-METHIONINE-DEPENDENT TRNA 4-DEMETHYLWYOSINE SYNTHASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003824	Molecular Function	catalytic activity	Interproscan
GO:0008033	Biological Process	tRNA processing	Interproscan
GO:0010181	Molecular Function	FMN binding	Interproscan
GO:0031591	Biological Process	wybutosine biosynthetic process	Interproscan
GO:0051536	Molecular Function	iron-sulfur cluster binding	Interproscan
GO:0051539	Molecular Function	4 iron, 4 sulfur cluster binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-