Gene detail

Detailed information of alvinactis_v1_g7237 in Alvinactis idsseensis sp. Nov. Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
alvinactis_v1_g7237	E3 UBIQUITIN-PROTEIN LIGASE TRIM37	chr_3	26748295	26764503	-

Gene Structure

More details in Jbrowse Sequence

CDS

alvinactis_v1_g7237

ATGCAAACGGAGCCTGAACTCTTCGATGTGGAAATGTGCCAGCTCTTAAAAGTTAAACTGGGTTTTTTAAGACAGTCCATCATTATATGGTCATGGAAGGTTAAACAGAAGCAGTCCTCTAAGAAAGATAGATGTGAACTTCACAACGAGAAGTTAAGCGTTTACTGCACAACATGCAAGAAGTGTATATGCCATCAATGCGCATTATGGGGCGGCACGCACTCTGGACATAATTTCAAGCCGCTCGACGAAATCTACGACCAGCATGTATCGTCCATTACTGACGAGGTTGCAGCATTACGAAGGCGTTTAATGGAGTTAATAAGCCTGGTACAGGAAGTGGAAAGAAATGTAGAAAGTCTTAGAGAAGCCAAAGAAGAGCGAGTGCGAGAGATTCGTAACGCAGTAGAACTGATGATCGCCAGACTTGATTCACAACTGAAGAGCAAACTTCTGACTTTAATGGGTCAGAAAAATTCACTCACGCAAGAAACCGAGCTTCTGGAATCTTTGTTGCAGGAAGTTGAACATCAGCTACATTCGTGTTCAAGAAGTGAACTGATTGCTAAGAGTGGTGAATTACTACAAATGTTTAACCAAGTTCATCGTAAACCTATGGCTTCCTTCGTAACTCCGCCAATTCCTGCTGACTTTTCAAGTGAAATAGTTCCTCCTTACGACACAAGTACATTTTGTATCACAAACTTCAGCATGCTGAAACGAAAAGCCGATCCAGTTTATAGCGAACCGCTGAACGTGAACGGTCTGAGCTGGAGGCTCAAGGTTTATCCTGATGGTAATGGTGTAGTTCGTGGTAATTACCTGTCAGTATTCTTAGAACTGACAGCTGGTCTGCCAGAAACCTCAAAGTATGAATATCGAGTGGAGATGGTTCATCACGCCTCGCCTGATTCCAGTAGAAATATCGTCAGGGAATTCGCTTCAGATTTTGAAGTCGGCGAGTGCTGGGGATATAATCGATTCTTTCGTCTGGATTTTCTGGCTAGCGAAGGATATCTTAACACAGCCAATGATACTCTGATTCTACGATTTCAAGTCAGAGCACCAACGTTCTACCAGAAATGTCGTGATCAACAGTGGTACATCAATCAACTAGAGACCAGTCAACTTCATTACATCCAACAAATGAACGACCTGAAAGAGCGCCTGGCCATCGAGCTTTCTCGCAACCACGCGGCTCCACCCTCGTCCTCTACTGCATCACCTGACCGAAGTCACATGTCACTTCTGGAACAATCGATTGATAACGATGATGAGTCCGCTGATCAGACCGTTATCAAGCAACCCAGACACAGCGTAAAAATGATTTATGGCAAGAACAACAGTAGTAGTAAACCCATGAAAACGCGCATGGCACTTCATACTGCCATAGACGTTGAGATGGCTACAGGACCTTCAGTGCAGACTTCTGAAGAAGGTGAAGAGATAACTGGCGAAGAGAACGCTATGGACGACAACCAGGATGACGTCGACGATGAAGACGAGAGTCAAGATGGAACAGACGATGAAACTTTAAACGAATTGGAAAGTAATGTGTTAGAAGACAGCACTTCCGAGCCTGAACCTGAAGGAGCAACAGAAGAGAAACAAGCTGTCCTTCGTGATGAAGCTGATCGACAATCCAAGACAGACAGTCACTATCAGACTCAGACAGACGACAGTGAGTGGGAGACACaagaagaagaagaagaagaagGCTGGACCTTGGAGGATGTCGAATTCGAGCTGGTAGAAGAGAAAAGGGATGCACAAGATTACCAGGATCACGAGGATCAAGACGAAGAAGGCGCGACGTCGGAAATGATGAAAGACAAGTTAGCATTCTTCGAGCCCGAAGCAAGGGTTTTATTGAACTTAATCAAGCTGAGTGAATCAGGGTCTCGATGGAAGACCAGTAGCCCGAACAGGAAGACGGTGTCCCTGATAGACATGACACGGGCTGACGAGAAGGCTGCCTCTAGACGAAGAGCGCGGTATGAACGCTGTAGTAGTATGCTGGAGAAGCTGCAGAGTTGCTTGAATCGAGCTGAAGCCAAGAGTGCTGCAGCTGCTTTCGAGAGTATGAAACACCTTGAAGAAGCCATGGCTAATGCGGTATATCCCAGGCATGGACGAGACCGCAGACAAAGACGAGGAGCGTCATTACCAGTTGTCACCCCTAACTCGAGAACCAAGACATCGCCAAACAGAGATTCTGATACATGTACAGTGGAAGCAGATCCAGATGTCGGAGGTTGTAGCCCTGAGTTGGACACGGAAACCACACCATCCAGTCGTACTTTACCCGAGAAAATCGACAACACAACCAGTAGCAGACAGCCGGCACACACAGGTGTCAAAGTCAGAAAGGTAGTGCGATCAAATGGAAATACCTCTGAGATAGGCCGAGATGGTCTAGAAAGAAGTTCGCAACTACTCTCAGAACTGAAGCGCGCCTCGACGTTAAATAAAGCGTACAGACTGAGTTTTTCTAGTCCTGAGGAAGAGGAGCTGCTACGTGCCCTTGATGCAGCAGCGTCCAAGAGTAAAAACAACACAGATTGCGAGGAAGGAGACGGTGTGTTATACGTCAGTACACAATCATCGGATGACGAGTTTGCGTCATCTATTACGTCAAATGATCACGTGGTTACATCAAATGTTGTTGACGTGAATTCAGCCAATAGCAGCGAGACTAACCGTAACCAAG

Transcript

alvinactis_v1_g7237

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00643	zf-B_box	B-box zinc finger	Domain	Interproscan
PF00917	MATH	MATH domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000315	Domain	B-box-type zinc finger	Interproscan
IPR002083	Domain	MATH/TRAF domain	Interproscan
IPR003649	Domain	B-box, C-terminal	Interproscan
IPR008974	Homologous_superfamily	TRAF-like	Interproscan
IPR037299	Domain	TRIM37, MATH domain	Interproscan
IPR053003	Family	TRIM/RBCC E3 ubiquitin-protein ligases	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR36754	E3 UBIQUITIN-PROTEIN LIGASE TRIM37	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005164	Molecular Function	tumor necrosis factor receptor binding	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005777	Cellular Component	peroxisome	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0016235	Cellular Component	aggresome	Interproscan
GO:0016567	Biological Process	protein ubiquitination	Interproscan
GO:0031625	Molecular Function	ubiquitin protein ligase binding	Interproscan
GO:0032088	Biological Process	negative regulation of NF-kappaB transcription factor activity	Interproscan
GO:0046600	Biological Process	negative regulation of centriole replication	Interproscan
GO:0051092	Biological Process	positive regulation of NF-kappaB transcription factor activity	Interproscan
GO:0051865	Biological Process	protein autoubiquitination	Interproscan
GO:0061630	Molecular Function	ubiquitin protein ligase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-