Gene detail

Detailed information of alvinactis_v1_g6811 in Alvinactis idsseensis sp. Nov. Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
alvinactis_v1_g6811	HISTONE ACETYLTRANSFERASE-RELATED	chr_3	21382673	21397239	-

Gene Structure

More details in Jbrowse Sequence

CDS

alvinactis_v1_g6811

ATGGGCAAGAATAAGGGTAAAGGACAACCTCAAGCATCTCGTGCAGAGTTAATGGTGATGACAGTGTCAGAGATTATCAAAGTGCTGATCAATGCTCACGAAAACGGTGAAAACGTGAACTTGAACAAAATAAAAGGTGCAGCAGCAAGTAAATATGGCTTAACGAGCCAACCTAGACTGGTTGATATAATAGCTGCTGTCCCACACACATATCGCAAGGTTCTTCTTCCCAAACTTAAAGCAAAACCAATCAGGACAGCATCTGGTATTGCAGTTGTAGCAGTTATGTGCAAGCCTCATAGATGTCCACACATTAACATGACTGGAAACATCTGCGTATATTGTCCAGGCGGACCAGATTCAGACTTTGAGTATTCTACGCAGTCCTACACAGGATATGAGCCAACGTCAATGAGAGCAATACGTGCAAGATACAACCCATTTCTTCAGACAAAGCATCGTGTTGATCAGCTTAAACAACTTGGACACAGTGTCGATAAGGTTGAATTTATAGTGATGGGTGGAACATTTATGTGTCTTGATGAAAACTACCGAGACTATTTTATCAAAAACTTGCATGATGCTCTATCTGGACATAGCAGTAACAACGTTGACGAAGCTGTCAAGTACTCAGAACGCAGCAAGACAAAATGTATTGGTATCACAATTGAAACAAGACCCGATTACTGCCTCAAAAAACATCTCAGTTCTATGTTATCCTATGGTTGCACAAGACTGGAAATAGGTGTTCAAAGTGTTTATGAAGATGTCGCACGTGATACTAATAGGGGGCACACTGTCAGGGCTGTATGTGAGTCCTTTCATCAGTCTAAGGATGCTGGTTTCAAGGTTGTGGCTCATATGATGCCTGATTTACCTAATGTTGGCTTGGAAAGAGATATCGACCAGTTCATTGAATTCTTTGAGAATCCAGCATTTCGAGCAGATGGTTTGAAGATTTATCCAACACTTGTAATCCGTGGAACGGGATTATACGAACTGTGGAAGACAGGTCGGTACAAAAGTTACCCTCCCAATACTCTCATCGACTTAGTAGCACGTATACTTGCTTTGGTGCCACCTTGGACTAGGGTGTACAGGGTACAAAGAGACATTCCTATGCCTTTGGTTAGTTCTGGAGTTGAACATGGTAACTTGAGAGAATTGGCACTGGCCAGAATGAAAGACTTGGGAACACAGTGTCGAGATGTCAGAACACGAGAAGTCGGTATTCAAGAGATCCACCACAAAGTCAGACCCTACGAGGTTGAACTAATACGTCGAGATTACGTTGCAAATAGTGGCTGGGAAACGTTTTTATCCTACGAAGATCCAGAACAAGATATCTTAGTTGGTCTACTGCGCCTGCGCAAGTGTTCAGAGGAATCGTTCAGACCCGAGCTGAAAGAACGCTGCTCAATAGTCAGAGAACTACACGTTTATGGCAGTGTTGTACCAGTCAGCGCTCGAGACCCAAGCAAGTTTCAACATCAGGGCTTTGGGATGTTGCTGATGGAGGAAGCAGAAAGAATCGCTCGTGATGAACACGGCTCGCTCAAAATTGCAGTCATCTCTGGTGTTGGTACACGAAACTACTATCGCAAGATTGGCTATGAGCTCGAGGGCCCTTATATGGTCAAGAGTCTTGTGACATCGCTATTAAACTCCGAGGCTGAAGCAGTCATGACTACCACCATACGAGAGATTTGGCACAACTTCTATGCCTACAGCACCCTTCACGGTTTACACTTTGTGTTTGAATCTGCCTTTGTGATCCGCCGAGTTCTTTGGGCCATTTTGCTGTGTGGGATGACTGTTACGTTTCTATACTTTGGAATACAAGGCTTTAGGAAGTGGAGAAGAAACGAAGTGTTTGTTACGACGCAGATTGAGTCACCCAAGGAATTGCAATTTCCCTCGGTGACGGTTTGCAACAAGAACATGCTGAAAAAGAGCAAAATTATGGGTCATGATGGTCAGCGGTATATGGACGGACTAGACTACAATTTTATGAAGGACTGGACAAAGATCTACAAAGAAATGAACGCTTCGTTTGACATCGAGAAAGAAGTTATCAAAAATGGACATAGCGCCACAGACGTGATCACTAAATGCAAATTTAATTCAGCCCCAAAATGTAAATTTACCAGCTTTTTTGAATCTAGGTCTGGAAGGTGTCACACCATAACCAACATTGGCCTGGTAAGCAAACTAGGAGAGGCTTACGGGTTGACCATGCTATTAGACGCCGAACCACATGAGTATTATGGACCATTCAGCTGGGATGGGACTGGATTTAAAATCGCTATACATAATTCCAGTGAAATTCCTTCGATGGACGTCGAAGGGATTAATATTCCTACTGGATTTACAACTAACTTGAGGATTCGGAAAAAGGAGAGACACAACTTGCCATACCCCTATCCTACCAAATGCGGCGAAAGGAAGCTCAAGAGTTCGACCGTTTATACTGAAAGCAGATGTTTTATAGAAAGCTACGCTCGCAAAGGAGCCGACGACTGTCACTGTAGAATGCTTGGTCTACCAGTGATTGGCGAAGAGAATAAACAACTTTGCAGCCTGGAAAACATCACATCTTGTATGTACCCAGCTCTGTACAAGCACCAATATAACCCCAGTGAATGCCCGATACGTTGCACCATCAATAGCTATGCCATGGATATTTCGTCGCTTGTGTATCCCTCCGAGTCTTTCTGGACTGTAATGAATGGCAACAAAGACATCACACAAATGCAGTACAAGTACAGTACTTCTAATGTAAACAACGTGTCGTTCAAGGACTGGTACAGAAACGCGAAGGTTAATGTAATTTATCCAACACGAGAAAGAGTTCATCCTCCGATTTCAAAACACTGA

Transcript

alvinactis_v1_g6811

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00858	ASC	Amiloride-sensitive sodium channel	Family	Interproscan
PF04055	Radical_SAM	Radical SAM superfamily	Domain	Interproscan
PF16199	Radical_SAM_C	Radical_SAM C-terminal domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000182	Domain	GNAT domain	Interproscan
IPR001873	Family	Epithelial sodium channel	Interproscan
IPR006638	Domain	Elp3/MiaA/NifB-like, radical SAM core domain	Interproscan
IPR007197	Domain	Radical SAM	Interproscan
IPR016181	Homologous_superfamily	Acyl-CoA N-acyltransferase	Interproscan
IPR032432	Domain	Radical SAM, C-terminal extension	Interproscan
IPR034687	Family	Elongator complex protein 3-like	Interproscan
IPR039661	Family	ELP3/YhcC	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11135	HISTONE ACETYLTRANSFERASE-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0002926	Biological Process	tRNA wobble base 5-methoxycarbonylmethyl-2-thiouridinylation	Interproscan
GO:0003824	Molecular Function	catalytic activity	Interproscan
GO:0005272	Molecular Function	sodium channel activity	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0006814	Biological Process	sodium ion transport	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0016747	Molecular Function	acyltransferase activity, transferring groups other than amino-acyl groups	Interproscan
GO:0033588	Cellular Component	elongator holoenzyme complex	Interproscan
GO:0051536	Molecular Function	iron-sulfur cluster binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-