Gene detail

Detailed information of alvinactis_v1_g6748 in Alvinactis idsseensis sp. Nov. Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
alvinactis_v1_g6748	CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 1-LIKE	chr_3	20584144	20600917	-

Gene Structure

More details in Jbrowse Sequence

CDS

alvinactis_v1_g6748

ATGCATCGAATTAAGAAAAGAATTGACCAATTGAAGGGTGATGTTAGTCCTAAGATTACTCAAGATAAGCTGAATGAGTATGGGCTGACAGGAATAACGCTAAGGCCATACCAGCTGGACGGTGTGGCGTTCATAAGAAAATGTTTCGACAGGAGACATGGGTGTATACTGGGAGATGAAATGGGACTAGGAAAAACCATCCAGGTGATTTCAACACTAATCCATCTCAAAGGATCCAAACAGATTGAAGGGCCATTTTTGGTTCTTTGTCCCCTTTCTGTTCTAGACAACTGGAAATCTGAATTTAAAAGGTTTGCTGGTGTTTTTCAAGTTGTAAGTCTTGTTGGTGACAAAGATGAACGTGAAGAAATCAAGCATTCCATTCGACACAGTTCTCAGGGTAACACAGGTTCATTTAATGTTCTTCTAACTACATATGAGATTTGTATCAGAGAAGTGTCATTCTTATGCAATTTTCACTGGAAAGTGCTGGCAGTAGATGAAGCTCATCGATTGAAGAACTCAAAATCCCTTCTTCATCAGGAATTAATTAAGTTTAAAAGGAATTTTACAATACTGTTGACTGGTACACCTGTGCAAAACAACCTGACTGAGTTATATTCCTTGTTATCATTTGTTTCCCCTGAGATATTTGAGAGTGATTTGGTGGAAGAATTTTTGGAAAACTTTGCAGACATAAAAGAAACATCAGGCAAGAGTAATGATTTGCAATATCTTCTGTCACCGTTCCTGCTCAGACGAGTAAAATCTGAAGTGATGAAAGATCTTCCTCAAAAGTCTGAGGTAATACTCTACACAGGCATGGCAGAAGTACAAAAGAACTACTACAAGGCTATCTTAACAAAAGATATTGAGGCATTCTCTAATGAAGGAGCAAATAGAACTGGGTTGAGGAACATCCTAGTTCGCCTAAGACAGTGTGTAGATCATCCATATTTGTTTGATGGCGTCGAACCTGAGCCGTTTGTTCTTGGAGATCATCTGATTACAGCAAGTGGGAAACTCCATGTACTGGATAAACTGCTGACGTTTTTACACGAAAGAGACCACAAGGTTCTTGTGTTTTCCCAAATGACGAGAATGCTGGACATCTTGCAGGACTATCTTGGCTACAGAGGATTTACTTACGAGCGTCTTGATGGTTCTGTACGTGGAGAAGAACGATACCTTGCCGTACGGAACTTCAACGAAATGGAGGACACGTTCGCCTTCTTGCTCAGTACTAAGGCTGGTGGACAAGGCCTCAACTTGACCTCAGCGGATACCGTGATCTTTGTAGACAGTGACTTCAATCCACAGAATGATCTACAGGCTGCAGCTAGAGCGCATCGACTTGGCCAGACAAgGCCTGTGAAAATTATTCGTTTAGTCGCGCGAAACACCGTGGAAGAGATTATCCTAAAACGAGCTGATGAGAAACTAAAGCTAACAAACAGTGTACTAGAAGGTGGACAGTTTTCAAGTGTTTCACAAGGATTAAACCACATTGCAGACACCAATGTACAGCTTGCCAACATCTTGAAGTTTGGTTTAGACAAATTGTTTGACTCAGAAGAAAATCCCGTAACTGATAAAGACTTCGAAAGAATACTTGGTAAAAGCTCTCGTGGAGAATGGGTGGTCGAGGATGACAAGAAACAAGAACAAGGAGAAGTGGGAAATGAAGCAAGTGAAGCAGAAGCTGACAGCATGTACGTCTATGAAGGTCGTGATTACTCCAAGGAAACTAGCGATCGGGACAAGGATGCCTTTGATAAAATGGTTACAGATATGCTTGAAGAAGTACGATCCTCAGAAAGAGCCACGCGTAGCGTTGCCAAGCTTCAACAACCACATATTTTGGATTTTCCAACGAGAAAAAGAAAAGCGTTGACTACAGAAGAATTAGAAGAACGAAGGAAAAAGAGAAATGAGAATGCAGCaaagaaaacaaggttgagagaagagaaagaacagatgaaagaagaggcaaggaaagagagaCTGGAGATTCTATGGAAAGAAAACAATTACAACTCTCTAAACGTCGCGTTgaacgacgaggatgaagacgaatctgaagaagaacggagcgacgaagacgaagacgaggaacgaTTGGACATTCAATACGTCAATGGTGACGTCACACAGCCTATCAAAAGCACAGGGAGCCCAGCGATCATCGTTCACTGTGTTGATGACTCGGGCTACTGGGGAAAAGGTGGTCTTTTTACTGTAATTTCACGTCGTTCGTCGTCATCAGTACAAAACTATGAGTTGGCTGGTACAATGGAAGACCTTCATCTCGGAGACGCACATCTCATACCATTTAGTGAAGACAACGACAAACAAGACAGTCAGAACTATCTCTCGTTGATTGTCTCTCAAACACGTGACAAACACCACCGTCTATTGCCGATGAATCTATCTGCGTTAAGCGAGGGACTGGAACGAGTGTACAAAGCAGCCAAGCAATTAAACGCGACGGTTCACTTGCCTCGTATTGGACACACGACACCAGGGTTTAATTGGTATGGCACGGAACGTCTTATCAGAAAGCACTTGGCATCTAGAGGTGTTTCTACCATGATATATTATTATCCTCGTAAACAAACCGCCGTGTCAAAACCAGACGTCTCTTCCAATGAAAACTCTTCCGACGAAAACGAACAGTCCTCGGTGCAGTTTCGTCCGGAACCCGAACAGTCCCGAGTATCATGCGAACCAAGTACATCAACCCGACCGCTGCCCGACTTTTTCTCTGGAGTTCGTGTTTACTTTAAGGACGTTTCTGGTGAAAAGGCGAAGAAGCTGAGTCGATATGTGATTGCATATCCTTTTAACTGTTGA

Transcript

alvinactis_v1_g6748

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00176	SNF2-rel_dom	SNF2-related domain	Domain	Interproscan
PF00271	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000330	Domain	SNF2, N-terminal	Interproscan
IPR001650	Domain	Helicase, C-terminal domain-like	Interproscan
IPR002589	Domain	Macro domain	Interproscan
IPR004827	Domain	Basic-leucine zipper domain	Interproscan
IPR014001	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR031053	Family	Chromodomain-helicase-DNA-binding protein 1-like	Interproscan
IPR038718	Homologous_superfamily	SNF2-like, N-terminal domain superfamily	Interproscan
IPR043472	Homologous_superfamily	Macro domain-like	Interproscan
IPR049730	Domain	SNF2/RAD5-like, C-terminal helicase domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47157	CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 1-LIKE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003678	Molecular Function	DNA helicase activity	Interproscan
GO:0003700	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0006281	Biological Process	DNA repair	Interproscan
GO:0006338	Biological Process	chromatin remodeling	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0140658	Molecular Function	ATP-dependent chromatin remodeler activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-