Gene detail

Detailed information of alvinactis_v1_g6206 in Alvinactis idsseensis sp. Nov. Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
alvinactis_v1_g6206	NON-LTR RETROLELEMENT REVERSE TRANSCRIPTASE-LIKE PROTEIN-RELATED	chr_3	12492890	12500760	+

Gene Structure

More details in Jbrowse Sequence

CDS

alvinactis_v1_g6206

ATGGTCAATGGCAATCCATATAATGGTCATAATGGTCTGTTCTGGGCATTTAAACAACATCAATGCCTCAAATCCACCAAGAAAAGACAACTTCGGGAATGGAAAAAAAGGAAAATCGATAAAAAAAGAGAAGAGGGCAGACTCAAAAGACAAAAGGTTCATGAAGAATCAAAAGGTGTGCCTCAGTGTAAGACTTGTAAACCGAAGTTGTGTGCAACCAGCACAGGAGGAGAAATCGAGAAAGTGGATATGACAAAAGCACTCCCCGAACCAGTAAAAGAGATAATCACGACAGAAACGAAGAGAGTTGTTGAAAGTCTGGTTGAAGACGCATCCAAACTCCTCAAGATACCAATCACACAAATCTATCCAAAGCACCAAAAAAAGGTAGCAGACCCTATTCATGTCAGAGAAATCGATCCAAACTTAATCTCCAAAACTTTAAATGAACCCATCGGATGTGGAACTTACGGAACTGTTTATCTTGCCACGTATCGCAAAATTAAAGTAGTGGTTAAGGAAATGAATTTGAGAAATGACTCCGTAAGAGAAAAAGAAATATGCAAGAAGGAGGTTCTTCACGAGGCTGAAGTCCTCTGTCGGCTTGGAGATCATCCTGGACTACCACTTCTTCTGGGGGTTCACTCTatgctgatgaataccagacagactcttgatgtgaagaactCAGATGGGCCCTCAGATGCTGTCAAAGAACATAACATATCCTTGATATCTTCATCGATGAATAACTACATTGACGAATTGAAGAAAGAAAGCTCCTCAAAACTTGAAGAATTAACCTCCCAGAACTTAtatcttgaagcttattcaaggagagaaaacattaaattctttaatattgaggaaacacctcgtgaaaatgtcgaagaggttcttcgtgatttcttggaggaggaacttggtcaccaagatgcaagagagatcaaaatccaaagggtgcatcgggttggaaagactaaaggagacaagccaagacccattttggcaagatttctaaggtataaggactgcgaatctatcttatccaagggacgccgtcttcacaacacggattaccaaatgtttacagacctcccttatgagataatacgaagaagaagactacagatggataatttgaggactgcgaaactaaataacattccagcatactttagcaagtcgcaaccggacaagctgtacataagaggaaagACATTTATGTTAAGTGCTACAGCAAGAATCTATTCAGCCGGCGTActtatgaatacgtttaactttaatatattatcactcaacatccggggcctgagggaatacaagaaaaacagaaagttattcaactggattgataaacacaaaggagaccgtggtattacttttctacaagaaacgcatagtactccagacattgaggatgattggtctcgtagaacaaagggggaattagttatgtcgcatgggagtgcaaacagcaaaggaacggctattttctttggaaaaagccaagtaactttaattgaagatatagttgaaaatataaatacaattgattgtcccgtggaaacatataccatttggggaggtgatgttaactttattttttatttagatcttgaagcatcaggcggtaatcctaatcataaattacgctctattgagacaatgaagacaattatgcaagatctagatctttgcgatatatggagaatacgcactccaactactaaacgttttacatggcgcggaacagcacaaggtaaaaacagtcatcttaaccattatctgcaccgtagattatatttctttttcatatccgatgagttgcagcccttcgtggaagattgtgatatcatcccggcaccatctacagatcattcagctctctcaataaatctcaaagcatttcaggaagaaagcaaagggccatctttttggaaatttaacaactctcttgccgaaaatgaagaatatgtcacaaagcttaaaacaacgatcgatgctattaaaaaatcattaaatagcgaaaatattttcaatccacaaaaccaataccaaaaacttgaatcagaaattaaacagatagaaaatactaatggatgggagaaagaagaagacatgattctagaacatgataaactcatcaaattacttgaagaaagaagtaactatattactgagggaattattatcaggtctaaagcaaaatgtaaaatatatttatccagatcggataaaacagaaaatgactgtctggaatttctgtcacagattgatacaccaaaactttcagaagaagataaagaggcatctgaagaaagcaaccaaagctgcgtaatgaataatggactagcaactaatttcctcccagtttttagaggaacaaaacaaggcgaccctatatcgccatatatttttatattggcaattgaaataatggctttaatgatgagaaaatgtacggatattgaagggattaagatcaaacataaacatattaagctggtattatttgcagatgatacaactttctttttgaaagatattaattcgttggatatcgtgttaaatcaattagacatgaaaattcattggatgatgagggaattccacgttgaattcattcgaaaaggcaatatcgcacaagtcgcgaagcgacgagtgcgatatcgccttttcgagtga

Transcript

alvinactis_v1_g6206

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00078	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000477	Domain	Reverse transcriptase domain	Interproscan
IPR011009	Homologous_superfamily	Protein kinase-like domain superfamily	Interproscan
IPR017441	Binding_site	Protein kinase, ATP binding site	Interproscan
IPR020635	Domain	Tyrosine-protein kinase, catalytic domain	Interproscan
IPR036691	Homologous_superfamily	Endonuclease/exonuclease/phosphatase superfamily	Interproscan
IPR052343	Family	Diverse Retrotransposon and Effector-Associated Protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46890	NON-LTR RETROLELEMENT REVERSE TRANSCRIPTASE-LIKE PROTEIN-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004713	Molecular Function	protein tyrosine kinase activity	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0006468	Biological Process	protein phosphorylation	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-