Gene detail

Detailed information of alvinactis_v1_g5120 in Alvinactis idsseensis sp. Nov. Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
alvinactis_v1_g5120	CALCIPRESSIN	chr_2	36337666	36347107	-

Gene Structure

More details in Jbrowse Sequence

CDS

alvinactis_v1_g5120

ATGATCAATTCCATGTTGGATGTTGGTCAATCTGCTTACTCACAGATACAGAAAATGAAAGGAAAAGATGATCCTGAAACCCTGAAAGAAACAAGCTCCAATGACACTTGGGAGAAAAAGATTAAACCAAGCAGAATGTTGTATCTTCAGATGACAGATGGCTCACAGAGTGTTCAAGGCATGGAATACCAGCTAATTCCTGGGTTGAATCAGAATATACTTCCTGGTACAAAGATACAGATTCAAGGTCCTCTTCCATGCAGACTTGGTGTTCTCTTGTTGACGGCCAAGAATGTTCGCATCCTTGGAGGCTCTGTTGATGAACTGGCTGAAAAGAATTCAGCTTGGAACATGTTACACAATTCCATTGGACAAGAAGCTCCTGCACAGCCAGCCAATATTAAAAAAGAAGAGTCTATTGCACCACAAGAAACCCAAGCTGTATCCACTAGCAGTAGTAATGTATCAGGCCATGTGAATGTACAGTCAGTAAATCACGTACAGATTTTGCAACAATCAGACAATCAAAACCAAATGGATTCTAGCACTAAGAGTAAAGCTGGAAATGGAATACGATCAATCAACAGCAATCCATTCAACAAGAGACCTCAACCAAGTAGTATGTCTACAAACAGTAGTTTTACAAATCAAGATATGAATGTGTTTGATGGCAGTGATGATTTCTTTGATGAAGTTGGTGATGAGAATTTCGACTTTGATCAGTTGGATCAAATGGAGCAGGAAGTCATTGACACAGATAAGCCTGACAATACAATAACAAGAGGTGATCAATATTGTAATTCTCCTGACATAGATCAAGGGTTTGATGACCAGGTTTTTGAGGATGAGCAACAACTTGCAGAAGAATTGATGGATGGGGATTTTGATCTCGGCGACTTTGATCTTGACACTTCGAAACAGTTCTGCAAACGACAAACTCCTGATCTAAAGTCAATTGGAACACAAAATACTTCACAACCTAAACCTACTGCATCAAGAAAACCTCAACAAAACAGATTATCAGTGAGTACAATAGTAAAACCTGCAGTCAATAAGCAAAGTGCAGCAGCTTCAAATGTAATAAAGATTGAGATGCAGGTGATtgatgatgatgatgatgatgatgatTCCAATCAACGTAGCAATAGTATTGGAAAAAGTGATACAAAACTGAATAAGTCTGCACAAAGTAAGCCTCCTGGATCCAAAAATGATTCCAATCAACGTAGCATTGGAAAAAGTGATACAAAACTGAATAAGACTGCACAAAGTAAGCCTCCTGGATCCAAAAAACTCAAGACAAGTAATATTATGTCTCATTTAATACCAAAAACAAAGTCAAGGGAAGATGATAATGGACAGACAAGAAGTGCAGAAGCTGGAAACATTGGATGCATTAACAGTTTAGGAGTCGGTGGTCAATCATCAATGCCTTATAGTTATTTGTCGACAGTTCTGAAAGAGTTACCTTTCCCTGTGGACAGGACAGTTAGAATTAAGGGCTACATTGCTACCCTGGTATCTCATTCACAAGTGTCTGACTTAAACCAAAGATGGAGAGTCACTGTCAAAATCAATGATGGATCGGCAAGTATTGATGCTGATTTAGGAGAACAGGTTTTGACTGAGCTGCTTGGCTGCCCACTTGAATCATTTCAGAATTCTATGGTGGAAGCCAGAAACACTCGTGATCCTTTCAAATGCAAAGCTCTACAACAGGACATGAGGTTGGACGATGAAATGACTGATCGTCAAGAAGACAACATGGCTGAAGTCTGTGAAGACACAGAAATGGTCGACGAGGAGCCTTCGTTAGACAACGTATCGTGTTGTTTGTCTATAACGAATGTTCCTGTAGCTGTATTTGAGGACGATAGTATTAAGAAAGAATTTGAACAGTTGTTTGGTGCATTTGATGAAGAAGCAAAAATATCGTATCTCAAGAGCTTTCGACGAGTGAGAGTTACTTTTACTGACGGTGAACATGCAAGCGATGCCAAGCTTGTCCTACATGGTTGTACATACAGAGGATCTGAAATTGGGGTTTACTTTGTACAGAACCTACCGTACACTTCAACTGAATCCTCTCAGCTCAGACCTCCACCCTTGACAAAACAGTTTCTGATATCTCCCCCATCATCACCACCGGTTGGCTGGGAACAGTCTCACGAGTCAAGTCCTGGAATCAATTATGATTTACTTGCAGCAGTGGCATCGTTAGATAAGACTGAGCCTTATGAACTGCACCCCCCTGACATTAATGCTCCCAGTATTGTCATTCATCTATGTGATGAGGATATCGAGATTGAGCAGGAGGATGCGGATATGTTTCACCCACTGAAGTGCTTGCCGAGAGCAGTTGTGCAAACTAGGAGACCAGAAAATCAGTGA

Transcript

alvinactis_v1_g5120

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04847	Calcipressin	Calcipressin	Family	Interproscan
PF08585	RMI1_N_C	RMI1, N-terminal OB-fold domain	Domain	Interproscan
PF16099	RMI1_C	Recq-mediated genome instability protein 1, C-terminal OB-fold	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006931	Family	Calcipressin	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR013894	Domain	RecQ mediated genome instability protein 1, OB-fold domain	Interproscan
IPR032199	Domain	RecQ-mediated genome instability protein 1, C-terminal OB-fold domain	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR042470	Homologous_superfamily	RecQ mediated genome instability protein, N-terminal OB-fold domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10300	CALCIPRESSIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000166	Molecular Function	nucleotide binding	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0008597	Molecular Function	calcium-dependent protein serine/threonine phosphatase regulator activity	Interproscan
GO:0019722	Biological Process	calcium-mediated signaling	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-