Detailed information of alvinactis_v1_g4749 in Alvinactis idsseensis sp. Nov. Gene info
Gene IDAnnotationChromosomeStartEndStrand
alvinactis_v1_g4749SPLICING FACTOR SF3A-RELATEDchr_23050017730514781+

Gene Structure
More details in Jbrowse Sequence
CDS
Transcript
Protein

Gene family
Gene familySubfamily
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Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF11931SF3a60_Prp9_CSF3a60/Prp9 C-terminalFamilyInterproscan
PF12108SF3a60_bindingdSplicing factor SF3a60 binding domainDomainInterproscan
PF13297SDE2_2CReplication stress response SDE2 C-terminalDomainInterproscan
PF16837SF3A3Pre-mRNA-splicing factor SF3A3, of SF3a complex, Prp9DomainInterproscan

InterPro
InterPro termTypeDescriptionSource
IPR000690DomainMatrin/U1-C, C2H2-type zinc fingerInterproscan
IPR021966DomainSplicing factor SF3a60 binding domainInterproscan
IPR024598DomainSplicing factor SF3a60 /Prp9 subunit, C-terminalInterproscan
IPR025086DomainSDE2-like, C-terminal domainInterproscan
IPR031774DomainSF3A3 domainInterproscan
IPR051421FamilyRNA Processing and DNA Damage Response RegulatorInterproscan

PANTHER
PANTHER termDescriptionSource
PTHR12786SPLICING FACTOR SF3A-RELATEDInterproscan

Gene Ontology
GO termsCategoryDescriptionSource
GO:0000398Biological ProcessmRNA splicing, via spliceosomeInterproscan
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0003723Molecular FunctionRNA bindingInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0005681Cellular Componentspliceosomal complexInterproscan
GO:0008270Molecular Functionzinc ion bindingInterproscan

KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
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