Gene detail

Detailed information of alvinactis_v1_g3541 in Alvinactis idsseensis sp. Nov. Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
alvinactis_v1_g3541	ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN	chr_2	11575180	11584670	+

Gene Structure

More details in Jbrowse Sequence

CDS

alvinactis_v1_g3541

ATGCTGACCTACTCGAGAAATTGTCTGATGTCGCTGCATTCGTGGTGGAAAGTATCGAGTCAACTTCAAATTTCCCGCCATGTTTGCCAAGCACAACAAGTTAAACGGCCTCTTTCTACTGAAGTTTGGAGCACTTTAAAGTCGATTGGACTGTTGAGGAAACACCGTGTTAGACGTGGTAGACCATCTACTCATGAAATTCATCGGATTAAACCAGTTATATCGGTAGACCGAATATATCCTTGCCGTAATAGCAGGAAGACCCAATTCACTGGAGTGGAAACAAACACATTAAATATTCAAAGTTCCAGATCTTCAAACAAAGGCGCCATATCGTCAAAATCAAACCTTATTGTGATAAAACGACTACCGTTCCCTACTGCACCGATTCTAGCTAAACCAGTGGACTTTACTTtgctgaatgccagatctgttaggaacaaagcacacgtaattaaagactttgttgtcgatcgtaacattgatttactggccataactgagatactagtgatactgaccagcaaatcatcgatgaactatgccctactggttataattttggacatgtaccgcgccaatctcgtggtggtggaattggcctactattcaaaaaatcttttggagaaattgattattaccactaccccactgctgattgttggcgactttaactttcacgtcgatgtcaaagaacctgctgcacttcaatttatgaacttacttgaatcatttggtctgaaacagtttactaacggtcctacacataaaaatggtcatacattggatctggttatttctagaacagatgacaacccagtgattgatgtcagcgttactgaccctgctatatcagaccactctgctgttcattgtcatcgatctttgaagaaaccctcttttgagcgaaaggaactgacttgcaggaaactacgttcaattgatgtctcccaattccgtaatgacatagctaatagtactcttctcaacgacaccagctctatgactctggacgcacttgtacacaattataatgaagttctgtcttcactcctggagaaacacgcgcctattaagagacgcctcgttacctttcgccctgctgcctcttggtactcccagagtataaaggatgagaagactaagagaaagaaactggaacgacggtggagagctacacataacagctctgccctgaagaaaactagtcaaacaatcaatcctaagcacatacaaggagacattgatttatcagcagcattcgatactgtagatcattcgatcttgctggaacgacttcgctgtagatttggaatcaaggggaaagccttacagtggcttacatcttatctagctgaccgcaaacaattcgtttgtattgatggtgtgagatcatctgaacgggatttacaatttggtgtccctcagggctctgtgctgggccctatactgtatctgctgtacacatcacctttgggcgacatcactagacattataacatgtgttaccatttgtacgccgatgatacccagatctacgtatcctttgaaccaactgctgaaggccaacaatattgtatatccgccattgaagcttgcctacgtgacattgatctgtggatgaccaacaacatgctcaaattgaataatgacaaatctgaacttctcgttcttcgatctcgacaacgtcctgagccatctattgatactattatgaataagtcaaagatggacgttcctgagacaccagatgctattgttttctcttcaacacttttcttgctggagaaagaggataatatcccggatgtgacacaaatttctgtgcgatgtaccactactactactactactactactactactactactactactactactactactactgctactactgctactactactactgctcctactactactgctgctgctgctgctgctgctgctgctgctgctactactgctgctgctgctgctgctgctgctgctgctgctgctgctgctgctgctgctgctgctgctgctgctgctgctgctgctgctgctgctgctgctgctgctgctgctgctgctgctgctgctgctgctgctgctgctgctgctgctgctgctgctgctgctgctgctgctgctgctgctgctgctgctgctgctgctgctgctgctgctgctgctgctgctgctgctgctgctgctgctgctgctgctgctgctactgctgctgctgctactgctgctgctgctgctgctgctgctgctgctactgctactacATGTaataataatataaataattttttttttatattgcgtaagctccatgtgaatagacaagtacgcatgcgcataacaatcagatattaa

Transcript

alvinactis_v1_g3541

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00078	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF14529	Exo_endo_phos_2	Endonuclease-reverse transcriptase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000104	Family	Antifreeze protein, type I	Interproscan
IPR000477	Domain	Reverse transcriptase domain	Interproscan
IPR002321	Family	Cytochrome c, class II	Interproscan
IPR005135	Domain	Endonuclease/exonuclease/phosphatase	Interproscan
IPR036691	Homologous_superfamily	Endonuclease/exonuclease/phosphatase superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46670	ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003824	Molecular Function	catalytic activity	Interproscan
GO:0005506	Molecular Function	iron ion binding	Interproscan
GO:0009055	Molecular Function	electron transfer activity	Interproscan
GO:0020037	Molecular Function	heme binding	Interproscan
GO:0050825	Molecular Function	ice binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-