Gene detail

Detailed information of alvinactis_v1_g31531 in Alvinactis idsseensis sp. Nov. Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
alvinactis_v1_g31531	UVRD / RECB / PCRA DNA HELICASE FAMILY MEMBER	chr_17	15387865	15460558	+

Gene Structure

More details in Jbrowse Sequence

CDS

alvinactis_v1_g31531

ATGGAAGAAATCATGGATGACGAAGGTTTTTTCAGTGTACCCCATATGCTTCCTCTCAATATTGCAAAGTTTATGAAAGGATTCAAACCACTTAGAGAAGGATCAAGTCTGGTTGATTCTCTAAAACAGCACAGAAAGTTCCCCATGATTCGATCGTTTTTGAAGGCATTATCGAAAAAGATTGAAAAGagcccctggtcaattctaagcctactttgccttgtttcaacatccgttagtgatgttacccaagtaatcaccagtatgctgcaagagaaaagttgtctgagttatgatgttattgaagctctctatttattgGCATGCTTTCTGTGGATTCTAAAATCACAAAACAGGGTCAATTCAGGCCTCCACTATCGTATCACGTATGCCTGCTACCTTTTTGAGAACAGCGGAGACATTCAGCCAATCACAGAAAACATCACACCATTCACAAGATCACTACAACCTACATACGAACAGAATGCCATTATAAAACACGATTTGAAACCACGTGAAGTAATTAAGATCGTGGCGTTCGCTGGTACAGGCAAAACAACGACTTTAGTCAAACTCACGGAACGTCACCCCGAGATGCGCTTTTTAAATGTGTGTTACAACAAGTCGATTCAGCTCCAGGCCGAAAAAGTATTTCCCCCAAATGTTGAATGCCGTACTTGGCATTCGTTAGCATATAGAGCTGTTGGATATAGATACCAAGGTCAGCTGGCTGGCTGTTTCAGAATACAGAATATCACCCGTTGCCTGTCAAAGGACACGACGTTTTTGCACGCACAGCGTGTAGTAAAAGCTCTAAGCAGCTTCATCGCATCATCTAGACCGTCgataagtattattgacgtcgatgattgcccacccattgaaggttctgtgaaaagtactatatacttcaatagcaaacagtataaagaaATTGTAGTTCGTGACGCCTTAATATGCTGGGGGAAAATGATTGATGAGAATGACAAGAATCTGTACATGACTCACGATGGTTATTTAAAGCTTTATCAGCTATCGAACCCATCTCTTTATTTGTATGACGGTATCTTAATCGATGAAGCACAGGACTGTACACCAGCAAATGCAAGTATATTGTTCCAGCAAAACTGCAGCAAGATATTAGTAGGGGATCCCTACCAACAGATCTATAGTTTTAGAGGAGCTAAGAACATTATGGATGAGATCCAATGTACAACGACATACTATCTAACACAGTCTTTTCGTTTTGGTCCAGAGATTGCCTACGTGGCAAACAGTTTATTGGAATGCTTGAAAGATGTTCATCACAAAACCTTGATGGGTAATCCCAGATCAGGTAGTGTTATGGGAGAACGATCCGGTCAGCTAGCTATCATCTGCCGAACCAACTTTTGTTTGTTCCAAGAAGCCGTGAGGGTGTGTCAGAGTGGCCGAAATATTCGAATTTCATTTGCTGGGGGTTTAAAAAGCTACCAGTTAGATCGTGTGCTCTCTATCTACAAGCTTTTTAAAGGAGAATATGTCGACGACCCTTTTCTACGCCAGTTCACATTCTCCACACTAAGGAAATACGCTCACGATGCTGCGGACAAAGTGCTACTGGGGAAGATCAAGATTGTTGAGTCCTTCAATGTCAACGTGCCAGCACACATCAAGGCCATCACTAGTTTAGCAACTGATCAAATGGAATGCGCAGACATCGTATTCTCTACTGTTCACAAGGCAAAAGGACTTGAGTTTGAAACAGTTCGAGTTGCTGATGACTTTACTGTTGAAGACAGCCTCTTTGGACATCCAGTGGAAAATCCTGAGGATGAGAAGAACATGCTGTATGTCGCTGTGACTCGGGCAAAGACTTGCTTGCAGATCAACAACACCATCAAGGACGTGTTAGAGTCAAACAAGGAATATTTTCTACAGCCTACGACATCAGAACTTTTATCCAAGACTAGTAAACCAGAATGCATATACTGTTATAATCCCTTGGTATTGGATCCTATGCCACACATGATTATGGAGCGACCAAAGCTTACAGTGTTTAACAGAGGCGTCAGGGAAGAGAGCGCAGCCGGTGTTGTCTGCATCACGTGTGCAATGGAGAAAGTGCCTCATTTTGGCTGCTTTGTCGACCCTGACTTACCGTTACCTACCaagaagaagaacaagaagaaaaagtcgaagaaatatgaggaagaacaagaaAGTTAA

Transcript

alvinactis_v1_g31531

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00580	UvrD-helicase	UvrD/REP helicase N-terminal domain	Domain	Interproscan
PF13361	UvrD_C	UvrD-like helicase C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000212	Family	DNA helicase, UvrD/REP type	Interproscan
IPR014016	Domain	UvrD-like helicase, ATP-binding domain	Interproscan
IPR014017	Domain	UvrD-like DNA helicase, C-terminal	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11070	UVRD / RECB / PCRA DNA HELICASE FAMILY MEMBER	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000724	Biological Process	double-strand break repair via homologous recombination	Interproscan
GO:0000725	Biological Process	recombinational repair	Interproscan
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0003678	Molecular Function	DNA helicase activity	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0016787	Molecular Function	hydrolase activity	Interproscan
GO:0031297	Biological Process	replication fork processing	Interproscan
GO:0043138	Molecular Function	3'-5' DNA helicase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-