Gene detail

Detailed information of alvinactis_v1_g30948 in Alvinactis idsseensis sp. Nov. Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
alvinactis_v1_g30948	CONTACTIN 5	chr_17	5492586	5496292	-

Gene Structure

More details in Jbrowse Sequence

CDS

alvinactis_v1_g30948

ATGAAACTGCAGTTGTCTATTTTATCGTTCGTTGTGTTTGTGAGTTTGATTCAAACAAGCCATGACGACATGATGGAAGTGAATTTGCAAGACATGTTTAATGATATGAACACCACACGTAAATATACTGGATTTACCGATGAGATTATCGTGGAGGGACCGACGACAAAAGACCGAGGCGTGTCAATATGTCTGGCTGGGATACTGCATGTCGAGTACAGACTTTACGCACATGAACAGATGCAGAGTGAACATGTCCAAACTACTGGTGGTACAGAGAAGACTTTGGAGAAGGAAGTGGAGAACGATTTGGGACAAGAAACAGTCGAGGCGAATATTCAACAGCCAGGTAATCGACCACGACGTCGTCGACAGAGCCAACAAAGTAACCAGAGTTCTTCGGCCATCGACATTGTCTTACGTCACTGCATCAGTCGAGTAGAACGTATGATCTTAAAAAGCCTCAGAGGTCTTCAAGGATCCAAAGGCAGTAGGGGCCGCAAAGGAAGACGAGGATCACCAGGACCCATAGGCAAACATGGCCCAAGAGGATTGCAAGGACCCCAAGGACCCAAAGGTCCCAAAGGAATAAAAGGAGATAATGGACCCAATGGGCCCCCTGGACCTCCTGGTCCCCAAGGACCCAAAGGAGATCCTGTTGACCCTATTTCAGCCCCAACGATATTTGTGCCTCCAAAGGACCTCGTTGTCAATAAAAGTGACACCGCGCGATTAAAATGCGTTGCCAATGGAAATCCTGCCCCAAAAGTCACGTGGTCAAAACAAAATTCGTCACTTCCTGTAGGACGTCACGTGATTGATTCGCATGGTTTCCTGTCAATCAAGCAAGTGACGTCAAGTGACGTAGGAGTATACAAGTGTACAGCTAAAAGTGTGCTTGGTAGTGCAGTAGCATCTTGTCAACTAATTGTACAAGTTCCACCTTTCTTCATATCGAAGCCAAAGTCTGTTATTGTTGAAGAAAACACAAACGTGACATTAGATTGTGGTCCCTCGGGCCCCCCTCGTCCTACCATATCATGGTCCAAGAGTATCGGAAACCTCCCTAAGAAGAGGACCACAGTCATATCAAACGGAAGCTTGGTTATCAAAAACATCAAGAAAACAGACGGTGGTACTTATATCTGTGCGGCTAAGAATCTGCTTGGAAGGTTGGCGACGCATGCGCAGATAATGGTGCTGCCTGCTCTGATGTTTACTCTAACACCACCATCACAGTTTGAGGAATACGCGGGAATAAGAGCTGTTTTTGACTGTCAAGCTGCGAATGCGCTTGAATTAGTCTGGATGAAAGACAACAAGCCGTTAGGGGTTTCTACCACCGTGTATCCCAACGGAACTCTTGTCATTCCTAGTCCTTCTAGTAAAGACAGTGGAAATTATGTATGCATTGCCAGGAACTTTCATCGATCGATTAAAACGACCACCAAAGTACTGGTCAGACATCCCAAGTCTTGCAGTGAACTAAAAACGAAATTCCCACAAACACGGCCATCTGGTAGGTACGTCATCTACCCCGATGGCCAATCAGGTCATACGCCATTCGCCGTATCCTGTGAGATGACTGACAAGGGAGGGGTGGGGGTGACTGTTGTCAGGCATGATAGTGAGGCAAGGACTCTTGTGGATGGTTTTGAGAGTGCAGGTTCTTACAGTCGAGATATTCAATACAATGGAGTAGTGATGGCTCAGTTGGCAAAACTGATTGAAATATCAACAAACTGTGAACAGTTCATAAAGTTTGAATGCAAAAATGACGTAAAGTTTCTAGAAAGTGGTGGTGATGCTTGGTGGGTATCACGTGATAGTGTTCGTCAGAATTATTGGGGAGGTGCGACACCAGGCAGCAAGAAATGCGCGTGTGGTATGACCAACACGTGCCAGGACACATCACAAGGATGTAATTGTTGGAATGCAGGAAGTGGATGGCGTAGTGACAGCGGTCTATTGACTGATAAATCTACTCTACCCGTCACTCAGTTAAGATTTGGAGATACTGGTGATAGTCGTGAACAAGGATACCACACCCTTGGTGAATTGAAGTGTTACGGACAGACAGAGTAA

Transcript

alvinactis_v1_g30948

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01391	Collagen	Collagen triple helix repeat (20 copies)	Repeat	Interproscan
PF07679	I-set	Immunoglobulin I-set domain	Domain	Interproscan
PF13927	Ig_3	Immunoglobulin domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003598	Domain	Immunoglobulin subtype 2	Interproscan
IPR003599	Domain	Immunoglobulin subtype	Interproscan
IPR007110	Domain	Immunoglobulin-like domain	Interproscan
IPR008160	Repeat	Collagen triple helix repeat	Interproscan
IPR013098	Domain	Immunoglobulin I-set	Interproscan
IPR013783	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR036056	Homologous_superfamily	Fibrinogen-like, C-terminal	Interproscan
IPR036179	Homologous_superfamily	Immunoglobulin-like domain superfamily	Interproscan
IPR050958	Family	Cell Adhesion and Cytoskeletal Organization	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45080	CONTACTIN 5	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005886	Cellular Component	plasma membrane	Interproscan
GO:0007156	Biological Process	homophilic cell adhesion via plasma membrane adhesion molecules	Interproscan
GO:0008046	Molecular Function	axon guidance receptor activity	Interproscan
GO:0030424	Cellular Component	axon	Interproscan
GO:0043025	Cellular Component	neuronal cell body	Interproscan
GO:0050808	Biological Process	synapse organization	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-